* installing *source* package ‘drmTMB’ ...
** this is package ‘drmTMB’ version ‘0.7.0’
** package ‘drmTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/TMB/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c drmTMB.cpp -o drmTMB.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/TMB/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
In file included from drmTMB.cpp:14:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from drmTMB.cpp:14:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
drmTMB.cpp:1254:16: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/TMB/include/tmb_core.hpp:2045:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
PROTECT( res = asSEXP( pf->operator()() ) );
^
drmTMB.cpp:1337:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:1417:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:1502:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:1640:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:1771:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:1833:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:1915:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:2019:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:2100:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:2184:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
drmTMB.cpp:2277:18: warning: unused variable 'sigma_i' [-Wunused-variable]
Type sigma_i = sqrt(V_known(i) + exp(Type(2.0) * log_sigma(i)));
^
15 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o drmTMB.so drmTMB.o init.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/drmTMB.Rcheck/00LOCK-drmTMB/00new/drmTMB/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (drmTMB)