Check results for 'cobs'

using R version 4.5.0 beta (2025-03-29 r88074)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘cobs/DESCRIPTION’ ... OK
this is package ‘cobs’ version ‘1.3-9’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘cobs’ can be installed ... [8s/11s] OK See the install log for details.
used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/2s] OK
checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
checking whether the package can be unloaded cleanly ... [1s/2s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
checking loading without being on the library search path ... [1s/2s] OK
checking whether startup messages can be suppressed ... [1s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [6s/14s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking examples ... [7s/18s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [30s/59s] NOTE Running ‘0_pt-ex.R’ [2s/4s] Running ‘ex1.R’ [5s/11s] Running ‘ex2-long.R’ [5s/12s] Running ‘ex3.R’ [1s/3s] Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ...15,16c15,16 < Warning message: < In cobs(weight, height, knots = weight, nknots = length(weight)) : --- > Warning messages: > 1: In cobs(weight, height, knots = weight, nknots = length(weight)) : 18a19,20 > 2: In cobs(weight, height, knots = weight, nknots = length(weight)) : > drqssbc2(): Not all flags are normal (== 1), ifl : 18 Running ‘multi-constr.R’ [3s/5s] Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ...56a57,80 > Warning messages: > 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 6: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 7: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 8: In cobs(x, y, trace = 3) : > drqssbc2(): Not all flags are normal (== 1), ifl : 18 136a161,178 > Warning in cobs(x, y, degree = 1, trace = 3) : > The algorithm has not converged after 100 iterations > Warning messages: > 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > 180a223,229 > Warning messages: > 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > Running ‘roof.R’ [2s/5s] Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK Running ‘small-ex.R’ [2s/3s] Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ...23a24,25 > Warning message: > In cobs(x, y) : drqssbc2(): Not all flags are normal (== 1), ifl : 18 Running ‘spline-ex.R’ [1s/2s] Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK Running ‘temp.R’ [2s/3s] Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ...444a445,446 > Warning in cobs(year, temp, knots.add = TRUE, degree = 1, constraint = "none", : > The algorithm has not converged after 100 iterations 453a456,457 > Warning in cobs(year, temp, nknots = 9, knots.add = TRUE, degree = 1, constraint = "none", : > The algorithm has not converged after 100 iterations 459,460c463,464 < coef[1:5]: -0.40655906, -0.31473700, 0.05651823, -0.05681818, 0.28681956 < R^2 = 72.56% ; empirical tau (over all): 54/113 = 0.4778761 (target tau= 0.5) --- > coef[1:5]: -0.39324840, -0.28115087, 0.05916295, -0.07465159, 0.31227753 > R^2 = 73.22% ; empirical tau (over all): 63/113 = 0.5575221 (target tau= 0.5) 465a470,473 > > **** ERROR in algorithm: ifl = 18 > > 467a476,478 > Warning message: > In cobs(year, temp, nknots = length(a50$knots), knots = a50$knot, : > drqssbc2(): Not all flags are normal (== 1), ifl : 18 469a481,482 > Warning in cobs(year, temp, nknots = length(a50$knots), knots = a50$knot, : > The algorithm has not converged after 100 iterations 475c488,490 < [1] 10 18 21 22 47 61 68 74 78 79 102 111 --- > [1] 1 2 9 10 17 18 20 21 22 23 26 27 35 36 42 47 48 49 52 > [20] 53 58 59 61 62 63 64 65 68 73 74 78 79 80 81 82 83 84 88 > [39] 90 91 94 98 100 101 102 104 108 109 111 112 477c492,495 < [1] 5 8 25 38 39 50 54 77 85 97 113 --- > [1] 3 4 5 6 7 8 11 12 13 14 15 16 19 24 25 28 29 30 31 > [20] 32 33 34 37 38 39 40 41 43 44 45 46 50 51 54 55 56 57 60 > [39] 66 67 69 70 71 72 75 76 77 85 86 87 89 92 93 95 96 97 99 > [58] 103 105 106 107 110 113 Running ‘wind.R’ [7s/11s]
checking PDF version of manual ... [7s/10s] OK
DONE Status: 1 NOTE
using check arguments '--no-clean-on-error '