Check results for 'clim4health'

using R version 4.6.0 (2026-04-24)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8 * current time: 2026-07-05 19:38:01 UTC
checking for file ‘clim4health/DESCRIPTION’ ... OK
this is package ‘clim4health’ version ‘0.1.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
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checking if there is a namespace ... OK
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checking whether package ‘clim4health’ can be installed ... [5s/9s] OK See the install log for details.
checking installed package size ... INFO installed size is 6.1Mb sub-directories of 1Mb or more: extdata 3.0Mb figures 2.3Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
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checking dependencies in R code ... OK
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checking R code for possible problems ... [7s/14s] OK
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checking for unstated dependencies in examples ... OK
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checking files in ‘vignettes’ ... OK
checking examples ... [14s/33s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [54s/62s] ERROR Running ‘testthat.R’ [54s/62s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(clim4health) > > test_check("clim4health") Variables found in 'path' are: 't2m'. Requested variables are: 't2m'. 'crs' is not provided. Assuming WGS 84 (EPSG:4326) for gridded data. Variables found in 'path' are: 't2m'. Requested variables are: 't2m'. Variables found in 'path' are: 't2m'. Requested variables are: 't2m'. 'crs' is not provided. Assuming WGS 84 (EPSG:4326) for gridded data. Linking to GEOS 3.14.1, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE terra 1.9.34 Attaching package: 'terra' The following objects are masked from 'package:testthat': compare, describe The 'exp' s2dv_cube object has been aggregated to regions and has an 'area' dimension. Only bias adjustment or calibration will be applied, no spatial downscaling. Note: If using 'Intbc' and 'points' is not specified, downscaling is to a grid. 'target_grid' has not been specified. Downscaling will be done to the grid of 'obs'. Note: If using 'Intbc' and 'points' is not specified, downscaling is to a grid. 'target_grid' has not been specified. Downscaling will be done to the grid of 'obs'. Note: If using 'Intlr' and 'points' is not specified, downscaling is to a grid. 'target_grid' has not been specified. Downscaling will be done to the grid of 'obs'. [1] "Loading data to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/ERA5.land..April.data_2025_04_202504.nc" [1] "Loaded 4-2025: took 0.00404691696166992" [1] "File saved to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/ERA5.land..April.data_2025_04_202504.nc" [1] "Loading data to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/hindcast_201004.nc" [1] "Loaded 4-2010: took 0.00384998321533203" [1] "File saved to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/hindcast_201004.nc" [1] "Loading data to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/hindcast_201104.nc" [1] "Loaded 4-2011: took 0.00379586219787598" [1] "File saved to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/hindcast_201104.nc" [1] "Loading data to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/hindcast_201204.nc" [1] "Loaded 4-2012: took 0.00425291061401367" [1] "File saved to: /Volumes/Builds/packages/big-sur-x86_64/results/4.6/clim4health.Rcheck/tests/testthat/hindcast_201204.nc" - test-dataset-1 - test-dataset-2 Available climate datasets: - product_type - variable Required parameters: Variables found in 'path' are: 't2m'. Requested variables are: 'invalid_var'. Requested variable 'invalid_var' not found in 'path'. Skipping. Variables found in 'path' are: 't2m'. Requested variables are: 't2m'. Aggregating ensemble members with the function: mean Spherical geometry (s2) switched off Coordinate system already present. i Adding new coordinate system, which will replace the existing one. Variables found in 'path' are: 't2m'. Requested variables are: 't2m'. The provided areas are not in WGS84 (EPSG: 4326). They will be transformed into that CRS to perfom the spatial aggregation 'crs' is not provided. Assuming WGS 84 (EPSG:4326) for gridded data. 'crs' is not provided. Taking CRS from the input data if available. Time zone in the input data is empty. Assuming system timezone: America/New_York Time zone in the input data is empty. Assuming system timezone: America/New_York Saving _problems/test-c4h_time-91.R Time zone in the input data is empty. Assuming system timezone: America/New_York Saving _problems/test-c4h_time-101.R Requested variable 'dummy' not found in 'path'. Skipping. [ FAIL 2 | WARN 37 | SKIP 8 | PASS 543 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On CRAN (8): 'test-c4h_downscale.R:255:3', 'test-c4h_downscale.R:277:3', 'test-c4h_downscale.R:300:3', 'test-c4h_downscale.R:311:3', 'test-c4h_downscale.R:347:3', 'test-c4h_downscale.R:384:3', 'test-utils-load.R:654:3', 'test-utils-load.R:792:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-c4h_time.R:54:3'): Time examples run without problems ──────── Expected `{ ... }` not to throw any errors. Actually got a <expectation_failure> with message: Expected `dim(stat_month$data)[["sdate"]]` to equal 3. Differences: `actual`: 6.0 `expected`: 3.0 ── Failure ('test-c4h_time.R:101:3'): Time examples run without problems ─────── Expected `dim(stat_daily$data)[["time"]]` to equal 1116. Differences: `actual`: 1147.0 `expected`: 1116.0 [ FAIL 2 | WARN 37 | SKIP 8 | PASS 543 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [17s/19s] OK
checking PDF version of manual ... [6s/6s] OK
DONE

Status: 1 ERROR