* installing *source* package ‘catlearn’ ...
** this is package ‘catlearn’ version ‘1.1’
** package ‘catlearn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
Warning in system2("xcrun", "--show-sdk-version", TRUE, TRUE) :
running command ''xcrun' --show-sdk-version 2>&1' had status 1
using SDK: ‘NA’
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpBM.cpp -o slpBM.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpDGCM.cpp -o slpDGCM.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpEXIT.cpp -o slpEXIT.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpLMSnet.cpp -o slpLMSnet.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpMack75.cpp -o slpMack75.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpNNCAG.cpp -o slpNNCAG.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpNNRAS.cpp -o slpNNRAS.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpRW.cpp -o slpRW.o
slpDGCM.cpp:136:9: warning: unused variable 'n' [-Wunused-variable]
uword n = exemplars.n_cols;
^
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpalcove.cpp -o slpalcove.o
clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c slpcovis.cpp -o slpcovis.o
In file included from slpalcove.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp.h:41:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/Vector.h:57:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/vector/Matrix.h:233:15: warning: ISO C++20 considers use of overloaded operator '!=' (with operand types 'typename MATRIX::Row::iterator' (aka 'iter_base<Rcpp::MatrixRow<14>::iter_traits>') and 'typename MATRIX::Row::iterator') to be ambiguous despite there being a unique best viable function with non-reversed arguments [-Wambiguous-reversed-operator]
if (j != jend) {
~ ^ ~~~~
slpalcove.cpp:348:26: note: in instantiation of function template specialization 'Rcpp::operator<<<Rcpp::PreserveStorage>' requested here
"Weights:" << std::endl << w << std::endl;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/vector/MatrixRow.h:111:14: note: candidate function with non-reversed arguments
bool operator!=( const iter_base& other) { return index != other.index ; }
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/vector/MatrixRow.h:110:14: note: ambiguous candidate function with reversed arguments
bool operator==( const iter_base& other) { return index == other.index ; }
^
In file included from slpalcove.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp.h:41:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/Vector.h:57:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/vector/Matrix.h:237:23: warning: ISO C++20 considers use of overloaded operator '!=' (with operand types 'typename MATRIX::Row::iterator' (aka 'iter_base<Rcpp::MatrixRow<14>::iter_traits>') and 'typename MATRIX::Row::iterator') to be ambiguous despite there being a unique best viable function with non-reversed arguments [-Wambiguous-reversed-operator]
for ( ; j != jend; j++) {
~ ^ ~~~~
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/vector/MatrixRow.h:111:14: note: candidate function with non-reversed arguments
bool operator!=( const iter_base& other) { return index != other.index ; }
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include/Rcpp/vector/MatrixRow.h:110:14: note: ambiguous candidate function with reversed arguments
bool operator==( const iter_base& other) { return index == other.index ; }
^
1 warning generated.
2 warnings generated.
clang++ -arch x86_64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o catlearn.so RcppExports.o slpBM.o slpDGCM.o slpEXIT.o slpLMSnet.o slpMack75.o slpNNCAG.o slpNNRAS.o slpRW.o slpalcove.o slpcovis.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/catlearn.Rcheck/00LOCK-catlearn/00new/catlearn/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (catlearn)