Check results for 'biometryassist'

using R version 4.5.1 (2025-06-13)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘biometryassist/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘biometryassist’ version ‘1.3.2’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... INFO Package which this enhances but not available for checking: ‘asreml’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘biometryassist’ can be installed ... [10s/13s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [2s/3s] OK
checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
checking whether the package can be unloaded cleanly ... [2s/3s] OK
checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
checking loading without being on the library search path ... [1s/1s] OK
checking whether startup messages can be suppressed ... [2s/2s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [9s/13s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [20s/30s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [106s/101s] ERROR Running ‘testthat.R’ [106s/100s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(biometryassist) > > test_check("biometryassist") Starting 2 test processes [ FAIL 1 | WARN 3 | SKIP 166 | PASS 340 ] ══ Skipped tests (166) ═════════════════════════════════════════════════════════ • On CRAN (151): 'test-des.R:8:5', 'test-des.R:22:5', 'test-all-w2.r:63:5', 'test-all-w2.r:77:5', 'test-all-w2.r:90:5', 'test-all-w2.r:103:5', 'test-all-w2.r:116:5', 'test-all-w2.r:130:5', 'test-all-w2.r:145:5', 'test-all-w2.r:162:5', 'test-all-w2.r:186:5', 'test-all-w2.r:214:5', 'test-all-w2.r:229:5', 'test-all-w2.r:243:5', 'test-all-w2.r:256:5', 'test-all-w2.r:266:5', 'test-all-w2.r:279:5', 'test-all-w2.r:292:5', 'test-all-w2.r:306:5', 'test-all-w2.r:317:5', 'test-all-w2.r:331:5', 'test-all-w2.r:345:5', 'test-all-w2.r:363:5', 'test-all-w2.r:378:5', 'test-all-w2.r:404:5', 'test-all-w2.r:433:5', 'test-heatmap.R:26:5', 'test-heatmap.R:38:5', 'test-heatmap.R:43:5', 'test-heatmap.R:48:5', 'test-heatmap.R:53:5', 'test-heatmap.R:60:5', 'test-heatmap.R:67:5', 'test-mct.R:6:5', 'test-mct.R:58:5', 'test-mct.R:77:5', 'test-mct.R:89:5', 'test-mct.R:103:5', 'test-mct.R:110:5', 'test-mct.R:155:5', 'test-mct.R:164:5', 'test-mct.R:249:5', 'test-mct.R:261:5', 'test-mct.R:277:5', 'test-mct.R:311:5', 'test-mct.R:324:5', 'test-mct.R:345:5', 'test-design.R:9:5', 'test-design.R:22:5', 'test-design.R:36:5', 'test-design.R:48:5', 'test-design.R:60:5', 'test-design.R:75:5', 'test-design.R:89:5', 'test-design.R:102:5', 'test-design.R:114:5', 'test-design.R:127:5', 'test-design.R:140:5', 'test-design.R:167:5', 'test-design.R:179:5', 'test-design.R:190:5', 'test-design.R:199:5', 'test-design.R:212:5', 'test-design.R:226:5', 'test-design.R:240:5', 'test-design.R:252:5', 'test-design.R:264:5', 'test-design.R:299:5', 'test-design.R:403:5', 'test-design.R:506:5', 'test-design.R:525:5', 'test-design.R:535:5', 'test-design.R:543:5', 'test-design.R:577:5', 'test-design.R:584:5', 'test-design.R:591:5', 'test-design.R:598:5', 'test-design.R:613:5', 'test-design.R:632:5', 'test-design.R:649:5', 'test-design.R:666:5', 'test-design.R:683:5', 'test-design.R:700:5', 'test-design.R:716:5', 'test-design.R:756:5', 'test-design.R:775:5', 'test-design.R:825:5', 'test-design.R:859:5', 'test-design.R:933:5', 'test-design.R:947:5', 'test-summary_graph.R:8:5', 'test-summary_graph.R:14:5', 'test-summary_graph.R:20:5', 'test-use_template.R:9:3', 'test-use_template.R:18:3', 'test-use_template.R:27:3', 'test-use_template.R:38:3', 'test-use_template.R:49:3', 'test-use_template.R:59:3', 'test-use_template.R:75:3', 'test-use_template.R:97:3', 'test-use_template.R:116:3', 'test-utility_functions.R:8:5', 'test-zzz_install_asreml.R:20:5', 'test-zzz_install_asreml.R:46:5', 'test-zzz_install_asreml.R:63:5', 'test-zzz_install_asreml.R:128:5', 'test-zzz_install_asreml.R:143:5', 'test-zzz_install_asreml.R:224:5', 'test-zzz_install_asreml.R:233:5', 'test-zzz_install_asreml.R:245:5', 'test-zzz_install_asreml.R:257:5', 'test-zzz_install_asreml.R:285:5', 'test-zzz_install_asreml.R:299:5', 'test-zzz_install_asreml.R:309:5', 'test-zzz_install_asreml.R:338:5', 'test-zzz_install_asreml.R:347:5', 'test-zzz_install_asreml.R:360:5', 'test-zzz_install_asreml.R:369:5', 'test-zzz_install_asreml.R:394:5', 'test-zzz_install_asreml.R:414:5', 'test-zzz_install_asreml.R:442:5', 'test-zzz_install_asreml.R:468:5', 'test-zzz_install_asreml.R:506:5', 'test-zzz_install_asreml.R:545:5', 'test-zzz_install_asreml.R:622:5', 'test-zzz_install_asreml.R:656:5', 'test-zzz_install_asreml.R:682:5', 'test-zzz_install_asreml.R:709:5', 'test-zzz_install_asreml.R:734:5', 'test-zzz_install_asreml.R:760:5', 'test-zzz_install_asreml.R:784:5', 'test-zzz_install_asreml.R:817:5', 'test-zzz_install_asreml.R:850:5', 'test-zzz_install_asreml.R:883:5', 'test-zzz_install_asreml.R:907:5', 'test-zzz_install_asreml.R:931:5', 'test-zzz_install_asreml.R:948:5', 'test-zzz_install_asreml.R:967:5', 'test-resplot.R:20:5', 'test-resplot.R:25:5', 'test-resplot.R:36:5', 'test-resplot.R:40:5', 'test-resplot.R:64:5', 'test-resplot.R:71:5', 'test-resplot.R:82:5', 'test-resplot.R:90:5', 'test-resplot.R:98:5', 'test-resplot.R:108:5', 'test-resplot.R:120:5', 'test-resplot.R:151:5' • On Mac (3): 'test-variogram.r:20:5', 'test-variogram.r:50:5', 'test-variogram.r:68:5' • rlang::is_installed("asreml") is not TRUE (12): 'test-logltest.R:4:5', 'test-logltest.R:26:5', 'test-logltest.R:34:5', 'test-logltest.R:47:5', 'test-logltest.R:59:5', 'test-logltest.R:75:5', 'test-logltest.R:92:5', 'test-logltest.R:98:5', 'test-mct.R:120:5', 'test-mct.R:171:5', 'test-mct.R:226:5', 'test-mct.R:234:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-zzz_install_asreml.R:16:5'): get_r_os returns correct structure and values ── result$arm is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 3 | SKIP 166 | PASS 340 ] Deleting unused snapshots: • all-w2/example1autoplot.svg • all-w2/example2autoplot.svg • all-w2/example3autoplot.svg • all-w2/example3lmmautoplot.svg • all-w2/example4autoplot.svg • all-w2/example4lmmautoplot.svg • all-w2/example5lmmautoplot1.svg • all-w2/example5lmmautoplot2.svg • all-w2/example6lmmautoplot2.svg • all-w2/example7lmmautoplot.svg • all-w2/exercise10autoplot.svg • all-w2/exercise11autoplot1.svg • all-w2/exercise11autoplot2.svg • all-w2/exercise12autoplot.svg • all-w2/exercise13autoplot1.svg • all-w2/exercise13autoplot2.svg • all-w2/exercise14autoplot.svg • all-w2/exercise15autoplot1.svg • all-w2/exercise15autoplot2.svg • all-w2/exercise15autoplot3.svg • all-w2/exercise1autoplot.svg • all-w2/exercise2autoplot.svg • all-w2/exercise3autoplot.svg • all-w2/exercise5autoplot.svg • all-w2/exercise6autoplot.svg • all-w2/exercise7autoplot.svg • all-w2/exercise9autoplot.svg • ggplot2-new/all-w2/example1resplot.svg • ggplot2-new/all-w2/example2resplot.svg • ggplot2-new/all-w2/example3lmmresplot.svg • ggplot2-new/all-w2/example3resplot.svg • ggplot2-new/all-w2/example4lmmresplot.svg • ggplot2-new/all-w2/example4resplot.svg • ggplot2-new/all-w2/example5lmmresplot.svg • ggplot2-new/all-w2/example6lmmresplot.svg • ggplot2-new/all-w2/example6variogram.svg • ggplot2-new/all-w2/example7lmmresplot.svg • ggplot2-new/all-w2/example7variogram.svg • ggplot2-new/all-w2/exercise10resplot.svg • ggplot2-new/all-w2/exercise11resplot.svg • ggplot2-new/all-w2/exercise12resplot.svg • ggplot2-new/all-w2/exercise13resplot.svg • ggplot2-new/all-w2/exercise13variogram.svg • ggplot2-new/all-w2/exercise14resplot.svg • ggplot2-new/all-w2/exercise14variogram.svg • ggplot2-new/all-w2/exercise15resplot.svg • ggplot2-new/all-w2/exercise15variogram.svg • ggplot2-new/all-w2/exercise1resplot.svg • ggplot2-new/all-w2/exercise2resplot.svg • ggplot2-new/all-w2/exercise3resplot.svg • ggplot2-new/all-w2/exercise4resplot.svg • ggplot2-new/all-w2/exercise5resplot.svg • ggplot2-new/all-w2/exercise6resplot.svg • ggplot2-new/all-w2/exercise7resplot.svg • ggplot2-new/all-w2/exercise8resplot.svg • ggplot2-new/all-w2/exercise9resplot.svg • ggplot2-new/des/crd-without-trt.svg • ggplot2-new/des/rcbd-without-trt.svg • ggplot2-new/design/3-way-factorial-with-names.svg • ggplot2-new/design/3-way-factorial.svg • ggplot2-new/design/3-way-rcbd-factorial-with-names.svg • ggplot2-new/design/column-buffers-rcbd.svg • ggplot2-new/design/column-buffers.svg • ggplot2-new/design/crd-color-blind-option1.svg • ggplot2-new/design/crd-color-blind-option2.svg • ggplot2-new/design/crd-color-blind-option3.svg • ggplot2-new/design/crd-color-blind-option4.svg • ggplot2-new/design/crd-color-blind-option5.svg • ggplot2-new/design/crd-colour-blind-option2.svg • ggplot2-new/design/crd-colour-blind-option3.svg • ggplot2-new/design/crd-colour-blind-option4.svg • ggplot2-new/design/crd-colour-blind-option5.svg • ggplot2-new/design/crd-colour-blind.svg • ggplot2-new/design/crd-paired-palette.svg • ggplot2-new/design/crd-plot-produced.svg • ggplot2-new/design/crd-set3-palette.svg • ggplot2-new/design/double-column-buffers-rcbd.svg • ggplot2-new/design/double-column-buffers.svg • ggplot2-new/design/double-row-buffers-rcbd.svg • ggplot2-new/design/double-row-buffers.svg • ggplot2-new/design/edge-buffers-rcbd.svg • ggplot2-new/design/edge-buffers.svg • ggplot2-new/design/factorial-crd-plot-no-space-sep.svg • ggplot2-new/design/factorial-crd-with-names.svg • ggplot2-new/design/factorial-lsd-plot-with-sep.svg • ggplot2-new/design/factorial-rcbd-plot-produced.svg • ggplot2-new/design/lsd-plot-produced.svg • ggplot2-new/design/nested-lsd.svg • ggplot2-new/design/nse-of-column-names-with-blocks.svg • ggplot2-new/design/plot-output.svg • ggplot2-new/design/quoted-column-names-with-blocks.svg • ggplot2-new/design/rcbd-color-blind-option1.svg • ggplot2-new/design/rcbd-colour-blind-cividis.svg • ggplot2-new/design/rcbd-colour-blind-inferno.svg • ggplot2-new/design/rcbd-colour-blind-magma.svg • ggplot2-new/design/rcbd-colour-blind-option1.svg • ggplot2-new/design/rcbd-colour-blind-plasma.svg • ggplot2-new/design/rcbd-colour-blind-viridis.svg • ggplot2-new/design/rcbd-colour-blind.svg • ggplot2-new/design/rcbd-paired-palette.svg • ggplot2-new/design/rcbd-plot-produced.svg • ggplot2-new/design/rcbd-rdbu-palette.svg • ggplot2-new/design/rcbd-set3-palette.svg • ggplot2-new/design/split-plot-produced.svg • ggplot2-new/design/split-plot-with-names.svg • ggplot2-new/design/split-plot-with-vector-names.svg • ggplot2-new/mct/3-way-interaction-internal.svg • ggplot2-new/mct/3-way-interaction.svg • ggplot2-new/resplot/artool-resplot-with-call.svg • ggplot2-new/resplot/large-data-shapiro.svg • ggplot2-new/resplot/onepage-cols-2.svg • ggplot2-new/resplot/onepage-cols-3.svg • ggplot2-new/resplot/onepage-off-2.svg • ggplot2-new/resplot/onepage-off-3.svg • ggplot2-new/resplot/onepage-on-page-1.svg • ggplot2-new/resplot/onepage-on-page-2.svg • ggplot2-new/resplot/onepage-on.svg • ggplot2-new/resplot/resplot-for-asreml-pt-1.svg • ggplot2-new/resplot/resplot-for-asreml-pt-2.svg • ggplot2-new/resplot/resplot-for-asreml-pt-3.svg • ggplot2-new/resplot/resplot-for-asreml-single.svg • ggplot2-new/resplot/resplot-for-sommer-mmes.svg • ggplot2-new/resplot/resplot-onepage-true.svg • ggplot2-new/resplot/resplot-with-smaller-call.svg • heatmap/heatmap-of-interpolated-grouped-data.svg • heatmap/heatmap-with-free-y.svg • heatmap/heatmap-with-one-row.svg • heatmap/heatmap-with-red-green-palette.svg • mct/aov-aliased-output.svg • mct/asreml-predictions.svg • mct/axis-and-label-rotation.svg • mct/axis-rotation-90.svg • mct/axis-rotation.svg • mct/interactions-work.svg • mct/mct-descending-output.svg • mct/mct-inverse-output.svg • mct/mct-logit-output.svg • mct/mct-output-2se.svg • mct/mct-power-output.svg • mct/mct-sqrt-output.svg • mct/rotation-and-axis-rotation.svg • mct/rotation-and-label-rotation.svg Error: Test failures Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [11s/18s] OK
checking PDF version of manual ... [7s/10s] OK
DONE Status: 1 ERROR
using check arguments '--no-clean-on-error '