• using R Under development (unstable) (2025-01-24 r87627)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘basket/DESCRIPTION’ ... OK
• this is package ‘basket’ version ‘0.10.11’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘basket’ can be installed ... [5s/8s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/11s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:31: Lost braces     31 | \item{[text_color]}{A text string setting the color of the exchangeability        | ^ checkRd: (-1) plot_pep.Rd:31-32: Lost braces     31 | \item{[text_color]}{A text string setting the color of the exchangeability        | ^ checkRd: (-1) plot_pep.Rd:33: Lost braces     33 | \item{[tile_color]}{A text string setting the color of the edges of the        | ^ checkRd: (-1) plot_pep.Rd:33-34: Lost braces     33 | \item{[tile_color]}{A text string setting the color of the edges of the        | ^ checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ? checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?     20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations        | ^
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [49s/74s] OK   Running ‘testthat.R’ [49s/73s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/22s] OK
• checking PDF version of manual ... [6s/10s] OK
• DONE Status: 1 NOTE
• using check arguments '--no-clean-on-error '