• using R version 4.0.2 (2020-06-22)
  • using platform: x86_64-apple-darwin17.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘basictabler/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘basictabler’ version ‘1.0.0’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘basictabler’ can be installed ... [9s/9s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [4s/4s] OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [4s/4s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [6s/6s] OK
      Running ‘testthat.R’ [5s/5s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [3s/3s] NONE
      ‘v01-introduction.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘v02-workingwithcells.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘v03-outputs.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘v04-styling.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘v05-findingandformatting.Rmd’ using ‘UTF-8’... [0s/1s] OK
      ‘v06-shiny.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘v07-excelexport.Rmd’ using ‘UTF-8’... [0s/0s] OK
  • checking re-building of vignette outputs ... [8s/8s] WARNING
    Error(s) in re-building vignettes:
    --- re-building ‘v01-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 46-49 (v01-introduction.Rmd)
    Error: processing vignette 'v01-introduction.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘v01-introduction.Rmd’

    --- re-building ‘v02-workingwithcells.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 55-74 (v02-workingwithcells.Rmd)
    Error: processing vignette 'v02-workingwithcells.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘v02-workingwithcells.Rmd’

    --- re-building ‘v03-outputs.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 42-56 (v03-outputs.Rmd)
    Error: processing vignette 'v03-outputs.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘v03-outputs.Rmd’

    --- re-building ‘v04-styling.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 101-118 (v04-styling.Rmd)
    Error: processing vignette 'v04-styling.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘v04-styling.Rmd’

    --- re-building ‘v05-findingandformatting.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

    Attaching package: 'dplyr'

    The following objects are masked from 'package:stats':

        filter, lag

    The following objects are masked from 'package:base':

        intersect, setdiff, setequal, union

    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Quitting from lines 32-55 (v05-findingandformatting.Rmd)
    Error: processing vignette 'v05-findingandformatting.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘v05-findingandformatting.Rmd’

    --- re-building ‘v06-shiny.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘v06-shiny.Rmd’

    --- re-building ‘v07-excelexport.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘v07-excelexport.Rmd’

    SUMMARY: processing the following files failed:
      ‘v01-introduction.Rmd’ ‘v02-workingwithcells.Rmd’ ‘v03-outputs.Rmd’
      ‘v04-styling.Rmd’ ‘v05-findingandformatting.Rmd’

    Error: Vignette re-building failed.
    Execution halted
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 WARNING
  • using check arguments '--no-clean-on-error '