• using R version 4.3.0 beta (2023-04-08 r84203)
  • using platform: x86_64-apple-darwin20 (64-bit)
  • R was compiled by
        Apple clang version 14.0.3 (clang-1403.0.22.14.1)
        GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3
  • using session charset: UTF-8
  • checking for file ‘aroma.affymetrix/DESCRIPTION’ ... OK
  • this is package ‘aroma.affymetrix’ version ‘3.2.1’
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Packages suggested but not available for checking:
      'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
      'AffymetrixDataTestFiles'
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘aroma.affymetrix’ can be installed ... [21s/21s] OK
    See the install log for details.
  • checking installed package size ... NOTE
      installed size is 6.1Mb
      sub-directories of 1Mb or more:
        R 3.0Mb
        help 1.1Mb
        testScripts 1.1Mb
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/1s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the package can be unloaded cleanly ... [1s/1s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
  • checking loading without being on the library search path ... [1s/1s] OK
  • checking startup messages can be suppressed ... [1s/1s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [37s/37s] OK
  • checking Rd files ... [3s/3s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... NOTE
    Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking examples ... [1s/1s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [4s/4s] OK
      Running ‘001.setupExampleData,annotationData.R’ [1s/1s]
      Running ‘002.setupExampleData,rawData.R’ [1s/1s]
      Running ‘AffymetrixCdfFile.R’ [1s/1s]
      Running ‘AffymetrixCelFile.R’ [1s/1s]
      Running ‘AffymetrixCelSet.R’ [1s/1s]
  • checking PDF version of manual ... [16s/16s] OK
  • DONE
    Status: 3 NOTEs
  • using check arguments '--no-clean-on-error '