• using R version 4.5.0 beta (2025-03-29 r88074)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘aroma.affymetrix/DESCRIPTION’ ... OK
• this is package ‘aroma.affymetrix’ version ‘3.2.2’
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking:   'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',   'AffymetrixDataTestFiles'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘aroma.affymetrix’ can be installed ... [32s/44s] OK See the install log for details.
• checking installed package size ... INFO   installed size is 6.2Mb   sub-directories of 1Mb or more:     R 3.1Mb     help 1.2Mb     testScripts 1.1Mb
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [52s/81s] OK
• checking Rd files ... [2s/4s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... INFO Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/7s] OK   Running ‘001.setupExampleData,annotationData.R’ [1s/1s]   Running ‘002.setupExampleData,rawData.R’ [1s/1s]   Running ‘AffymetrixCdfFile.R’ [1s/1s]   Running ‘AffymetrixCelFile.R’ [1s/1s]   Running ‘AffymetrixCelSet.R’ [1s/2s]
• checking PDF version of manual ... [20s/40s] OK
• DONE Status: OK
• using check arguments '--no-clean-on-error '