• using R version 4.3.0 beta (2023-04-08 r84203)
  • using platform: x86_64-apple-darwin20 (64-bit)
  • R was compiled by
        Apple clang version 14.0.3 (clang-1403.0.22.14.1)
        GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3
  • using session charset: UTF-8
  • checking for file ‘adiv/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘adiv’ version ‘2.2’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘adiv’ can be installed ... [19s/24s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [3s/4s] OK
  • checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
  • checking whether the package can be unloaded cleanly ... [3s/3s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
  • checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
  • checking loading without being on the library search path ... [3s/4s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [24s/31s] OK
  • checking Rd files ... [1s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [4s/6s] OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [25s/34s] OK
      ‘adivGuide.Rnw’ using ‘latin1’... [25s/34s] OK
  • checking re-building of vignette outputs ... [34s/45s] NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘adivGuide.Rnw’ using Sweave

    Attaching package: ‘phylobase’

    The following object is masked from ‘package:ape’:

        edges

    Error: processing vignette 'adivGuide.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'adivGuide.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `wasysym.sty' not found.

    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)

    ! Emergency stop.
    <read *>
             
    l.12 \usepackage
                    [all]{xy}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘adivGuide.Rnw’

    SUMMARY: processing the following file failed:
      ‘adivGuide.Rnw’

    Error: Vignette re-building failed.
    Execution halted
  • checking PDF version of manual ... [7s/9s] OK
  • DONE
    Status: 1 NOTE
  • using check arguments '--no-clean-on-error '