- using R Under development (unstable) (2026-03-18 r89649)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
* current time: 2026-04-01 21:11:38 UTC
- checking for file ‘SurvMetrics/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘SurvMetrics’ version ‘0.5.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘caret’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘SurvMetrics’ can be installed ... [4s/4s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/4s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/5s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/3s] ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SurvMetrics)
> Sys.setenv("OMP_THREAD_LIMIT" = 1)
> test_check("SurvMetrics")
randomForestSRC 3.6.0
Type rfsrc.news() to see new features, changes, and bug fixes.
Loading required package: prodlim
Error: package or namespace load failed for 'prodlim' in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
Saving _problems/test-Brier-35.R
Loading required package: prodlim
Error: package or namespace load failed for 'prodlim' in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
Saving _problems/test-Cindex-62.R
Loading required package: prodlim
Error: package or namespace load failed for 'prodlim' in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
Saving _problems/test-IAEISE-5.R
Loading required package: prodlim
Error: package or namespace load failed for 'prodlim' in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
Saving _problems/test-IBS-5.R
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 38 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Brier.R:35:3'): Brier ──────────────────────────────────────────
Error: package 'prodlim' could not be loaded
Backtrace:
▆
1. └─base::library(pec) at test-Brier.R:35:3
2. └─base::.getRequiredPackages2(...)
── Error ('test-Cindex.R:62:3'): Cindex ────────────────────────────────────────
Error: package 'prodlim' could not be loaded
Backtrace:
▆
1. └─base::library(pec) at test-Cindex.R:62:3
2. └─base::.getRequiredPackages2(...)
── Error ('test-IAEISE.R:5:3'): IAEISE ─────────────────────────────────────────
Error: package 'prodlim' could not be loaded
Backtrace:
▆
1. └─base::library(pec) at test-IAEISE.R:5:3
2. └─base::.getRequiredPackages2(...)
── Error ('test-IBS.R:5:3'): IBS ───────────────────────────────────────────────
Error: package 'prodlim' could not be loaded
Backtrace:
▆
1. └─base::library(pec) at test-IBS.R:5:3
2. └─base::.getRequiredPackages2(...)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 38 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/8s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘SurvMetrics-vignette.Rmd’ using rmarkdown
Quitting from SurvMetrics-vignette.Rmd:85-93 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'caret'
---
Backtrace:
▆
1. └─base::library(caret)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SurvMetrics-vignette.Rmd' failed with diagnostics:
there is no package called 'caret'
--- failed re-building ‘SurvMetrics-vignette.Rmd’
SUMMARY: processing the following file failed:
‘SurvMetrics-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/5s] OK
- DONE
Status: 2 ERRORs
- using check arguments '--no-clean-on-error '