- using R version 4.5.0 beta (2025-03-29 r88074)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘SIMICO/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘SIMICO’ version ‘0.2.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘SIMICO’ can be installed ... [7s/9s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/7s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) fd_term.Rd:4: Lost braces; missing escapes or markup?
4 | d/d_{theta_l}
| ^
checkRd: (-1) gamma_fd.Rd:4: Lost braces; missing escapes or markup?
4 | d/d_{gamma_l}
| ^
checkRd: (-1) gamma_off.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{gamma_l}d{gamma_m}
| ^
checkRd: (-1) gamma_off.Rd:4: Lost braces
4 | d^2/d_{gamma_l}d{gamma_m}
| ^
checkRd: (-1) gamma_off.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the [off-diagonal] Information matrix term for I_{gamma gamma} with respect to outcome l and outcome m.
| ^
checkRd: (-1) gamma_on.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{gamma_l}d{gamma_l}
| ^
checkRd: (-1) gamma_on.Rd:4: Lost braces
4 | d^2/d_{gamma_l}d{gamma_l}
| ^
checkRd: (-1) gamma_on.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the [on-diagonal] Information matrix term for I_{gamma gamma} with respect to outcome l.
| ^
checkRd: (-1) gammasigma.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{gamma_l}d{sigma^2}
| ^
checkRd: (-1) gammasigma.Rd:4: Lost braces
4 | d^2/d_{gamma_l}d{sigma^2}
| ^
checkRd: (-1) gammasigma.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the Information matrix term of I_{eta gamma} for one outcome of interest l.
| ^
checkRd: (-1) gammatheta.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{gamma_k}d{theta_k}
| ^
checkRd: (-1) gammatheta.Rd:4: Lost braces
4 | d^2/d_{gamma_k}d{theta_k}
| ^
checkRd: (-1) gammatheta.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the Information matrix term of I_{eta gamma} for outcome k.
| ^
checkRd: (-1) gammatheta_off.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{gamma_l}d{theta_m}
| ^
checkRd: (-1) gammatheta_off.Rd:4: Lost braces
4 | d^2/d_{gamma_l}d{theta_m}
| ^
checkRd: (-1) gammatheta_off.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the Information matrix term of I_{eta gamma} for outcomes l and m
| ^
checkRd: (-1) haz_left.Rd:4: Lost braces; missing escapes or markup?
4 | H_{ik}(L_{ik})
| ^
checkRd: (-1) haz_left.Rd:4: Lost braces; missing escapes or markup?
4 | H_{ik}(L_{ik})
| ^
checkRd: (-1) haz_right.Rd:4: Lost braces; missing escapes or markup?
4 | H_{ik}(R_{ik})
| ^
checkRd: (-1) haz_right.Rd:4: Lost braces; missing escapes or markup?
4 | H_{ik}(R_{ik})
| ^
checkRd: (-1) sd_off.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{theta_k}d{sigma^2}
| ^
checkRd: (-1) sd_off.Rd:4: Lost braces
4 | d^2/d_{theta_k}d{sigma^2}
| ^
checkRd: (-1) sd_off.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the Information matrix term of I_{theta sigma^2} for outcomes l and m.
| ^
checkRd: (-1) sd_on.Rd:4: Lost braces
4 | d^2/d{sigma^2}^2
| ^
checkRd: (-1) sd_on.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the Information matrix term of I_{sigma^2 sigma^2} for outcome l.
| ^
checkRd: (-1) simico_out.Rd:17: Lost braces; missing escapes or markup?
17 | \item{Itt}{I_{theta theta} - Information matrix of theta.}
| ^
checkRd: (-1) ss_fd.Rd:4: Lost braces; missing escapes or markup?
4 | d/d_{sigma^2}
| ^
checkRd: (-1) ss_sd.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{sigma^2}^2
| ^
checkRd: (-1) st_off.Rd:4: Lost braces; missing escapes or markup?
4 | d^2/d_{theta_l}d{sigma^2}
| ^
checkRd: (-1) st_off.Rd:4: Lost braces
4 | d^2/d_{theta_l}d{sigma^2}
| ^
checkRd: (-1) st_off.Rd:7: Lost braces; missing escapes or markup?
7 | Calculates the Information matrix term of I_{eta theta} for one outcome of interest l.
| ^
checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})
| ^
checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})
| ^
checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})
| ^
checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})
| ^
checkRd: (-1) surv_left.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(L_{ik})
| ^
checkRd: (-1) surv_left.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(L_{ik})
| ^
checkRd: (-1) surv_right.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(R_{ik})
| ^
checkRd: (-1) surv_right.Rd:4: Lost braces; missing escapes or markup?
4 | S_{ik}(R_{ik})
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [8s/10s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [181s/268s] OK
- checking PDF version of manual ... [6s/8s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '