Check results for 'REDCapTidieR'

using R Under development (unstable) (2026-03-18 r89649)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8 * current time: 2026-04-01 20:55:48 UTC
checking for file ‘REDCapTidieR/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘REDCapTidieR’ version ‘1.2.4’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... INFO Package suggested but not available for checking: ‘labelled’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘REDCapTidieR’ can be installed ... [6s/7s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/1s] OK
checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [5s/6s] OK
checking Rd files ... [1s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [2s/2s] ERROR Running examples in ‘REDCapTidieR-Ex.R’ failed The error most likely occurred in: > ### Name: format-helpers > ### Title: Format REDCap variable labels > ### Aliases: format-helpers fmt_strip_whitespace fmt_strip_trailing_colon > ### fmt_strip_trailing_punct fmt_strip_html fmt_strip_field_embedding > > ### ** Examples > > > fmt_strip_whitespace("Poorly Spaced Label ") [1] "Poorly Spaced Label" > > fmt_strip_trailing_colon("Label:") [1] "Label" > > fmt_strip_trailing_punct("Label-") [1] "Label" > > fmt_strip_html("<b>Bold Label</b>") [1] "Bold Label" > > fmt_strip_field_embedding("Label{another_field}") [1] "Label" > > superheroes_supertbl # A REDCapTidieR Supertibble with 2 instruments redcap_form_name redcap_form_label redcap_data redcap_metadata structure <chr> <chr> <list> <list> <chr> 1 heroes_information Heroes Information <tibble> <tibble [11 × 17]> nonrepea… 2 super_hero_powers Super Hero Powers <tibble> <tibble [2 × 17]> repeating # ℹ 4 more variables: data_rows <int>, data_cols <int>, data_size <lbstr_by>, # data_na_pct <formttbl> > > make_labelled(superheroes_supertbl, format_labels = fmt_strip_trailing_colon) Error in make_labelled(superheroes_supertbl, format_labels = fmt_strip_trailing_colon) : The package "labelled" is required to use `make_labelled()` Calls: make_labelled -> check_installed Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [11s/20s] ERROR Running ‘testthat.R’ [10s/20s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(REDCapTidieR) > > test_check("REDCapTidieR") Saving _problems/test-labelled-210.R Saving _problems/test-labelled-310.R Saving _problems/test-labelled-323.R Saving _problems/test-write-54.R Saving _problems/test-write-210.R Saving _problems/test-write-236.R [ FAIL 8 | WARN 9 | SKIP 14 | PASS 268 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • On CRAN (5): 'test-lint-free.R:2:3', 'test-read_redcap.R:1:1', 'test-supertibble.R:1:1', 'test-utils.R:214:3', 'test-write.R:341:3' • {labelled} is not installed (8): 'test-labelled.R:2:3', 'test-labelled.R:52:3', 'test-labelled.R:180:3', 'test-labelled.R:231:3', 'test-labelled.R:258:3', 'test-labelled.R:329:3', 'test-utils.R:74:3', 'test-utils.R:482:3' • {labelled} is not installed. (1): 'test-utils.R:461:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-labelled.R:210:3'): make_labelled handles redcap_metadata tibbles of different sizes ── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(supertbl)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. └─REDCapTidieR::make_labelled(supertbl) at test-labelled.R:210:3 2. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") ── Error ('test-labelled.R:310:3'): make_labelled errors with bad inputs ─────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(123)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. ├─testthat::expect_error(make_labelled(123), class = "check_supertbl") at test-labelled.R:310:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─REDCapTidieR::make_labelled(123) 8. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") ── Error ('test-labelled.R:323:3'): make_labelled preserves S3 class ─────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(superheroes_supertbl)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. └─REDCapTidieR::make_labelled(superheroes_supertbl) at test-labelled.R:323:3 2. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") ── Error ('test-write.R:54:3'): write_redcap_xlsx with labels works ──────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(supertbl)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. └─REDCapTidieR::make_labelled(supertbl) at test-write.R:54:3 2. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") ── Error ('test-write.R:135:5'): write_redcap_xlsx has expected supertibble and metadata outputs ── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(.)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:134:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. ├─REDCapTidieR::write_redcap_xlsx(...) at test-write.R:135:5 5. │ └─REDCapTidieR:::check_arg_is_supertbl(supertbl) 6. ├─supertbl %>% make_labelled() 7. └─REDCapTidieR::make_labelled(.) 8. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") ── Failure ('test-write.R:166:5'): write_redcap_xlsx checks work ─────────────── Expected `.` not to throw any errors. Actually got a <rlib_error_package_not_found> with message: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:157:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. ├─... %>% expect_no_error() at test-write.R:166:5 5. └─testthat::expect_no_error(.) ── Error ('test-write.R:205:3'): supertbl_recode works ───────────────────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(.)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. ├─... %>% make_labelled() at test-write.R:205:3 2. └─REDCapTidieR::make_labelled(.) 3. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") ── Error ('test-write.R:235:3'): check_labelled works ────────────────────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `make_labelled(.)`: The package "labelled" is required to use `make_labelled()` Backtrace: ▆ 1. ├─supertbl %>% make_labelled() at test-write.R:235:3 2. └─REDCapTidieR::make_labelled(.) 3. └─rlang::check_installed("labelled", reason = "to use `make_labelled()`") [ FAIL 8 | WARN 9 | SKIP 14 | PASS 268 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [12s/14s] OK
checking PDF version of manual ... [8s/14s] OK
DONE Status: 2 ERRORs
using check arguments '--no-clean-on-error '