Check results for 'REDCapTidieR'

using R version 4.6.0 (2026-04-24)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8 * current time: 2026-04-30 15:42:29 UTC
checking for file ‘REDCapTidieR/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘REDCapTidieR’ version ‘1.2.4’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... INFO Package suggested but not available for checking: ‘openxlsx2’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘REDCapTidieR’ can be installed ... [6s/12s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/2s] OK
checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/2s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [5s/7s] OK
checking Rd files ... [1s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘openxlsx2’
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [2s/3s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [9s/14s] ERROR Running ‘testthat.R’ [9s/13s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(REDCapTidieR) > > test_check("REDCapTidieR") [ FAIL 5 | WARN 8 | SKIP 5 | PASS 311 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (5): 'test-lint-free.R:2:3', 'test-read_redcap.R:1:1', 'test-supertibble.R:1:1', 'test-utils.R:214:3', 'test-write.R:341:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-write.R:32:5'): write_redcap_xlsx without labels works ───────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `write_redcap_xlsx(supertbl, file = "supertbl_wb.xlsx", include_metadata_sheet = FALSE, include_toc_sheet = FALSE, recode_logical = FALSE)`: The package "openxlsx2" is required to write Excel files. Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:31:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. └─REDCapTidieR::write_redcap_xlsx(...) at test-write.R:32:5 5. └─rlang::check_installed("openxlsx2", reason = "to write Excel files.") ── Error ('test-write.R:69:5'): write_redcap_xlsx with labels works ──────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `write_redcap_xlsx(labelled_supertbl, add_labelled_column_headers = TRUE, file = "labelled_supertbl_wb.xlsx", include_toc_sheet = FALSE, include_metadata_sheet = FALSE, recode_logical = FALSE)`: The package "openxlsx2" is required to write Excel files. Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:68:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. └─REDCapTidieR::write_redcap_xlsx(...) at test-write.R:69:5 5. └─rlang::check_installed("openxlsx2", reason = "to write Excel files.") ── Error ('test-write.R:103:5'): write_redcap_xlsx has expected supertibble and metadata outputs ── <rlib_error_package_not_found/rlang_error/error/condition> Error in `write_redcap_xlsx(supertbl, add_labelled_column_headers = FALSE, file = "default_supertbl_wb.xlsx", include_toc_sheet = TRUE, include_metadata_sheet = TRUE, recode_logical = FALSE)`: The package "openxlsx2" is required to write Excel files. Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:102:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. └─REDCapTidieR::write_redcap_xlsx(...) at test-write.R:103:5 5. └─rlang::check_installed("openxlsx2", reason = "to write Excel files.") ── Failure ('test-write.R:166:5'): write_redcap_xlsx checks work ─────────────── Expected `.` not to throw any errors. Actually got a <rlib_error_package_not_found> with message: The package "openxlsx2" is required to write Excel files. Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:157:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. ├─... %>% expect_no_error() at test-write.R:166:5 5. └─testthat::expect_no_error(.) ── Error ('test-write.R:308:5'): key argument checks work ────────────────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `write_redcap_xlsx(supertbl, file = "temp.docx")`: The package "openxlsx2" is required to write Excel files. Backtrace: ▆ 1. ├─withr::with_tempdir(...) at test-write.R:307:3 2. │ └─withr::with_dir(tmp, code) 3. │ └─base::force(code) 4. ├─testthat::expect_warning(...) at test-write.R:308:5 5. │ └─testthat:::expect_condition_matching_(...) 6. │ └─testthat:::quasi_capture(...) 7. │ ├─testthat (local) .capture(...) 8. │ │ └─base::withCallingHandlers(...) 9. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 10. └─REDCapTidieR::write_redcap_xlsx(supertbl, file = "temp.docx") 11. └─rlang::check_installed("openxlsx2", reason = "to write Excel files.") [ FAIL 5 | WARN 8 | SKIP 5 | PASS 311 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [12s/18s] OK
checking PDF version of manual ... [8s/14s] OK
DONE Status: 1 ERROR
using check arguments '--no-clean-on-error '