* installing *source* package ‘PFIM’ ...
** this is package ‘PFIM’ version ‘8.0’
** package ‘PFIM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FedorovWynnAlgorithm.cpp -o FedorovWynnAlgorithm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MultiplicativeAlgorithm.cpp -o MultiplicativeAlgorithm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PGBOAlgorithm.cpp -o PGBOAlgorithm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PSOKernel.cpp -o PSOKernel.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SimplexAlgorithm.cpp -o SimplexAlgorithm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compute-linalg.cpp -o compute-linalg.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compute-mfvar.cpp -o compute-mfvar.o
FedorovWynnAlgorithm.cpp:43:18: warning: unused variable 'k_singular_det' [-Wunused-const-variable]
constexpr double k_singular_det = 1e30;
^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compute-pop-fim-combo.cpp -o compute-pop-fim-combo.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compute-residual-error.cpp -o compute-residual-error.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_WARN_LEVEL=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ode-cache.cpp -o ode-cache.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o PFIM.so FedorovWynnAlgorithm.o MultiplicativeAlgorithm.o PGBOAlgorithm.o PSOKernel.o RcppExports.o SimplexAlgorithm.o compute-linalg.o compute-mfvar.o compute-pop-fim-combo.o compute-residual-error.o init.o ode-cache.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.6/PFIM.Rcheck/00LOCK-PFIM/00new/PFIM/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PFIM)