• using R version 4.5.0 beta (2025-03-29 r88074)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘MapGAM/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘MapGAM’ version ‘1.3’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘MapGAM’ can be installed ... [7s/11s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [2s/2s] OK
  • checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
  • checking whether the package can be unloaded cleanly ... [2s/3s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
  • checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
  • checking loading without being on the library search path ... [2s/3s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [7s/13s] OK
  • checking Rd files ... [1s/1s] NOTE checkRd: (-1) MapGAM-package.Rd:28: Lost braces     28 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data: MapGAM}. The R Journal 2020, 12:32-48.        | ^ checkRd: (-1) MapGAM-package.Rd:32: Lost braces     32 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary regression approach}. J Roy Stat Soc C-App 1998, 47:559-573.        | ^ checkRd: (-1) MapGAM-package.Rd:34: Lost braces     34 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.        | ^ checkRd: (-1) MapGAM-package.Rd:36: Lost braces     36 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11.        | ^ checkRd: (-1) MapGAM-package.Rd:38: Lost braces     38 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.        | ^ checkRd: (-1) MapGAM-package.Rd:40: Lost braces     40 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.        | ^ checkRd: (-1) modgam.Rd:108: Lost braces    108 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data: MapGAM}. The R Journal 2020, 12:32-48.        | ^ checkRd: (-1) modgam.Rd:112-113: Lost braces    112 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary        | ^ checkRd: (-1) modgam.Rd:115: Lost braces    115 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11.        | ^ checkRd: (-1) modgam.Rd:117: Lost braces    117 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.        | ^ checkRd: (-1) modgam.Rd:119: Lost braces    119 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.        | ^ checkRd: (-1) sampcont.Rd:74: Lost braces     74 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.        | ^
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/1s] OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking examples ... [4s/7s] OK
  • checking PDF version of manual ... [7s/11s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '