- using R version 4.5.0 beta (2025-03-29 r88074)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘LZeroSpikeInference/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘LZeroSpikeInference’ version ‘1.0.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘LZeroSpikeInference’ can be installed ... [2s/2s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/3s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) LZeroSpikeInference.Rd:20: Lost braces; missing escapes or markup?
20 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:20: Lost braces; missing escapes or markup?
20 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:20: Lost braces; missing escapes or markup?
20 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:20: Lost braces
20 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:20: Lost braces; missing escapes or markup?
20 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:28: Lost braces; missing escapes or markup?
28 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:28: Lost braces; missing escapes or markup?
28 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:28: Lost braces; missing escapes or markup?
28 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:28: Lost braces
28 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:28: Lost braces; missing escapes or markup?
28 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:28: Lost braces; missing escapes or markup?
28 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) LZeroSpikeInference.Rd:29: Lost braces; missing escapes or markup?
29 | where the indicator variable 1_{(A,B)} equals 1 if the event A cup B holds, and equals zero otherwise.
| ^
checkRd: (-1) cv.estimateSpikes.Rd:50: Lost braces; missing escapes or markup?
50 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:50: Lost braces; missing escapes or markup?
50 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:50: Lost braces; missing escapes or markup?
50 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:50: Lost braces
50 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:50: Lost braces; missing escapes or markup?
50 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:59: Lost braces; missing escapes or markup?
59 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:59: Lost braces; missing escapes or markup?
59 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:59: Lost braces; missing escapes or markup?
59 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:59: Lost braces
59 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:59: Lost braces; missing escapes or markup?
59 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:59: Lost braces; missing escapes or markup?
59 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) cv.estimateSpikes.Rd:60: Lost braces; missing escapes or markup?
60 | where the indicator variable 1_{(A,B)} equals 1 if the event A cup B holds, and equals zero otherwise.
| ^
checkRd: (-1) estimateSpikes.Rd:41: Lost braces; missing escapes or markup?
41 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:41: Lost braces; missing escapes or markup?
41 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:41: Lost braces; missing escapes or markup?
41 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:41: Lost braces
41 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:41: Lost braces; missing escapes or markup?
41 | minimize_{c1,...,cT} 0.5 sum_{t=1}^T ( y_t - c_t )^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:49: Lost braces; missing escapes or markup?
49 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:49: Lost braces; missing escapes or markup?
49 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:49: Lost braces; missing escapes or markup?
49 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:49: Lost braces
49 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:49: Lost braces; missing escapes or markup?
49 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:49: Lost braces; missing escapes or markup?
49 | minimize_{c1,...,cT,b1,...,bT} 0.5 sum_{t=1}^T (y_t - c_t - b_t)^2 + lambda sum_{t=2}^T 1_{c_t neq gamma c_{t-1}, b_t neq b_{t-1} }
| ^
checkRd: (-1) estimateSpikes.Rd:50: Lost braces; missing escapes or markup?
50 | where the indicator variable 1_{(A,B)} equals 1 if the event A cup B holds, and equals zero otherwise.
| ^
checkRd: (-1) simulateAR1.Rd:31: Lost braces; missing escapes or markup?
31 | c_t = gam * c_{t-1} + s_t
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking LazyData ... INFO
'LazyData' is specified without a 'data' directory
- checking examples ... [1s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [1s/1s] OK
Running ‘testthat.R’ [1s/1s]
- checking PDF version of manual ... [6s/7s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '