Check results for 'ISwR'

using R version 4.3.0 beta (2023-04-08 r84203)
using platform: x86_64-apple-darwin20 (64-bit)
R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3
using session charset: UTF-8
checking for file ‘ISwR/DESCRIPTION’ ... OK
this is package ‘ISwR’ version ‘2.0-8’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘ISwR’ can be installed ... [2s/2s] OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [1s/1s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... [1s/2s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [6s/6s] OK
  Running ‘allexercises.R’ [3s/3s]
  Comparing ‘allexercises.Rout’ to ‘allexercises.Rout.save’ ...192c192
< In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
---
> In wilcox.test.default(x = c(4.62, 5.29, 5.52, 3.71, 4.02, 5.09, :
224c224
< alternative hypothesis: true mean difference is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
228c228
< mean difference
---
> mean of the differences
1607a1608,1611
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.8492 -0.7536 -0.4838 0.8809 2.5796
>
1633a1638,1641
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.00075 -0.36457 -0.09559 0.57964 1.68281
>
1658a1667,1670
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.9886 -0.4001 -0.2386 0.5503 1.8189
>
1733a1746,1749
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.8298 -0.6412 -0.1189 0.6440 1.7503
>
1806a1823,1826
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.59247 -0.04329 0.00000 0.00063 2.60152
>
1829a1850,1853
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.5641 -0.0247 0.0000 0.0000 2.5668
>
2012a2037,2044
> Deviance Residuals:
> 1 2 3 4 5 6 7 8
> -0.49634 1.16817 0.32723 0.40686 -1.09690 -0.22273 0.16765 -0.30402
> 9 10 11 12 13 14 15 16
> -0.09277 -0.12546 0.37096 0.08185 0.34354 -0.90739 -0.23107 -0.28244
> 17 18 19 20 21 22 23 24
> 0.77919 0.15943 -0.15340 0.30384 0.09596 0.13145 -0.41848 -0.08840
>
2073a2106,2109
>
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -1.4288 -0.7090 -0.5282 -0.3361 3.4559
  Running ‘allscripts.R’ [3s/3s]
  Comparing ‘allscripts.Rout’ to ‘allscripts.Rout.save’ ...487c487
< [1] 190
---
> [1] 185
982c982
< alternative hypothesis: true difference in means between group lean and group obese is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
995c995
< alternative hypothesis: true difference in means between group lean and group obese is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
1024c1024
< In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
---
> In wilcox.test.default(x = c(7.53, 7.48, 8.08, 8.09, 10.15, 8.4, :
1049c1049
< alternative hypothesis: true mean difference is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
1053c1053
< mean difference
---
> mean of the differences
2749,2751c2749,2751
< gr 1 206698 206698 NaN NaN
< factor(gr) 4 17405 4351 NaN NaN
< Residuals 0 0 NaN
---
> gr 1 206698 206698
> factor(gr) 4 17405 4351
> Residuals 0 0
3004c3004
< alternative hypothesis: true difference in means between group Yes and group No is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
3141a3142,3147
> Deviance Residuals:
> 1 2 3 4 5 6
> -0.04344 0.54145 -0.25476 -0.80051 0.19759 -0.46602
> 7 8
> -0.21262 0.56231
>
3164a3171,3176
> Deviance Residuals:
> 1 2 3 4 5 6
> -0.04344 0.54145 -0.25476 -0.80051 0.19759 -0.46602
> 7 8
> -0.21262 0.56231
>
3187a3200,3205
> Deviance Residuals:
> 1 2 3 4 5 6
> -0.01247 0.47756 -0.24050 -0.82050 0.30794 -0.62742
> 7 8
> -0.14449 0.45770
>
3279a3298,3301
> Deviance Residuals:
> <4 4 4.5 5 5.5 6+
> -0.18531 0.00877 -0.32760 0.34087 1.04313 -0.66215
>
3367a3390,3393
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.32759 -0.18998 0.01253 0.12132 2.45922
>
3387a3414,3417
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.56180 -0.12461 0.02475 0.08055 2.86120
>
3485a3516,3519
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.45697 -0.15434 0.00835 0.09505 2.59033
>
3586c3620
< [1,] 205 57 NA NA NA
---
> 205 57 NA NA NA
3727a3762,3765
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.63573 -0.67296 -0.03436 0.37258 1.85267
>
3793a3832,3835
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -2.64704 -0.62400 0.02301 0.36721 1.84308
>
3941a3984,3987
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -0.6758 -0.3159 -0.1821 -0.0918 4.1972
>
4003a4050,4053
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -0.4215 -0.3452 -0.2490 -0.1429 3.9398
>
4070a4121,4124
>
> Deviance Residuals:
> Min 1Q Median 3Q Max
> -0.8113 -0.3172 -0.2168 -0.1196 4.1466
checking PDF version of manual ... [4s/5s] OK
DONE
Status: OK
using check arguments '--no-clean-on-error '