Install log for 'GRAB'

* installing *source* package ‘GRAB’ ...
** this is package ‘GRAB’ version ‘0.2.1’
** package ‘GRAB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c BGEN.cpp -o BGEN.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DenseGRM.cpp -o DenseGRM.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Main.cpp -o Main.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c PLINK.cpp -o PLINK.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c POLMM.cpp -o POLMM.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SAGELD.cpp -o SAGELD.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SPACox.cpp -o SPACox.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SPAGRM.cpp -o SPAGRM.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SPAmix.cpp -o SPAmix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c UTIL.cpp -o UTIL.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D SQLITE_ENABLE_COLUMN_METADATA -DARMA_64BIT_WORD=1 -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c WtCoxG.cpp -o WtCoxG.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o GRAB.so BGEN.o DenseGRM.o Main.o PLINK.o POLMM.o RcppExports.o SAGELD.o SPACox.o SPAGRM.o SPAmix.o UTIL.o WtCoxG.o -lz -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/GRAB.Rcheck/00LOCK-GRAB/00new/GRAB/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GRAB)