- using R version 4.5.2 Patched (2026-01-31 r89382)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘EpiForsk/DESCRIPTION’ ... OK
- this is package ‘EpiForsk’ version ‘0.2.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘EpiForsk’ can be installed ... [10s/19s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/4s] OK
- checking whether the package can be unloaded cleanly ... [2s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/5s] OK
- checking loading without being on the library search path ... [2s/5s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [10s/24s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/6s] ERROR
Running examples in ‘EpiForsk-Ex.R’ failed
The error most likely occurred in:
> ### Name: fct_confint
> ### Title: Confidence set for functions of model parameters
> ### Aliases: fct_confint fct_confint.lm fct_confint.glm fct_confint.lms
> ### fct_confint.default
>
> ### ** Examples
>
> data <- 1:5 |>
+ purrr::map(
+ \(x) {
+ name = paste0("cov", x);
+ dplyr::tibble("{name}" := rnorm(100, 1))
+ }
+ ) |>
+ purrr::list_cbind() |>
+ dplyr::mutate(
+ y = rowSums(dplyr::across(dplyr::everything())) + rnorm(100)
+ )
> lm <- lm(
+ as.formula(
+ paste0("y ~ 0 + ", paste0(names(data)[names(data) != "y"], collapse = " + "))
+ ),
+ data
+ )
> fct_confint(lm, sum)
Error in (function (.x, .f, ..., .progress = FALSE) : ℹ In index: 1.
Caused by error in `Rmosek::mosek()`:
! Unknown exported object to be built. Please use 'Rmosek::mosek_attachbuilder' to complete the installation of Rmosek.
Calls: fct_confint ... tryCatchList -> tryCatchOne -> <Anonymous> -> ci_fct_error_handler
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/3s] OK
Running ‘testthat.R’ [2s/3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [20s/28s] OK
- checking PDF version of manual ... [10s/14s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '