* installing *source* package ‘BayesReversePLLH’ ... ** package ‘BayesReversePLLH’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BayesReversePLLH.cpp -o BayesReversePLLH.o clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from BayesReversePLLH.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:331:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:334:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ BayesReversePLLH.cpp:345:10: warning: unused variable 'mean' [-Wunused-variable] double mean=0; ^ BayesReversePLLH.cpp:513:10: warning: unused variable 'PSpike' [-Wunused-variable] double PSpike=PSlab/(1-PSlab); ^ BayesReversePLLH.cpp:519:7: warning: unused variable 'b' [-Wunused-variable] int b=0; ^ BayesReversePLLH.cpp:520:7: warning: unused variable 'k' [-Wunused-variable] int k=0; ^ BayesReversePLLH.cpp:567:7: warning: unused variable 'which1' [-Wunused-variable] int which1=0; ^ BayesReversePLLH.cpp:572:10: warning: unused variable 'mean2' [-Wunused-variable] double mean2=0; ^ BayesReversePLLH.cpp:578:10: warning: unused variable 'mean1' [-Wunused-variable] double mean1=0; ^ BayesReversePLLH.cpp:579:10: warning: unused variable 'Con' [-Wunused-variable] double Con=0; ^ BayesReversePLLH.cpp:638:10: warning: unused variable 'bprop' [-Wunused-variable] double bprop=1; ^ BayesReversePLLH.cpp:639:10: warning: unused variable 'Intb' [-Wunused-variable] double Intb=1; ^ BayesReversePLLH.cpp:640:10: warning: unused variable 'Numb' [-Wunused-variable] double Numb=2; ^ BayesReversePLLH.cpp:644:10: warning: unused variable 'prob1' [-Wunused-variable] double prob1=0; ^ BayesReversePLLH.cpp:645:10: warning: unused variable 'med2' [-Wunused-variable] double med2=0; ^ BayesReversePLLH.cpp:1238:7: warning: unused variable 'b' [-Wunused-variable] int b=0; ^ BayesReversePLLH.cpp:1246:10: warning: unused variable 'beta' [-Wunused-variable] double beta = 1 ; ^ BayesReversePLLH.cpp:1272:10: warning: unused variable 'betaprop' [-Wunused-variable] double betaprop=0; ^ BayesReversePLLH.cpp:1275:10: warning: unused variable 'svar' [-Wunused-variable] double svar=1; ^ BayesReversePLLH.cpp:1276:10: warning: unused variable 'Ints' [-Wunused-variable] double Ints=1; ^ BayesReversePLLH.cpp:1277:10: warning: unused variable 'Nums' [-Wunused-variable] double Nums=2; ^ BayesReversePLLH.cpp:1281:10: warning: unused variable 'mean1' [-Wunused-variable] double mean1=0; ^ BayesReversePLLH.cpp:1282:10: warning: unused variable 'Con' [-Wunused-variable] double Con=0; ^ BayesReversePLLH.cpp:1303:7: warning: unused variable 'which1' [-Wunused-variable] int which1=0; ^ BayesReversePLLH.cpp:1308:10: warning: unused variable 'bprop' [-Wunused-variable] double bprop=1; ^ BayesReversePLLH.cpp:1309:10: warning: unused variable 'Intb' [-Wunused-variable] double Intb=1; ^ BayesReversePLLH.cpp:1310:10: warning: unused variable 'Numb' [-Wunused-variable] double Numb=2; ^ BayesReversePLLH.cpp:1314:10: warning: unused variable 'prob1' [-Wunused-variable] double prob1=0; ^ BayesReversePLLH.cpp:1315:10: warning: unused variable 'med2' [-Wunused-variable] double med2=0; ^ BayesReversePLLH.cpp:1880:7: warning: unused variable 'b' [-Wunused-variable] int b=0; ^ BayesReversePLLH.cpp:1881:7: warning: unused variable 'k' [-Wunused-variable] int k=0; ^ BayesReversePLLH.cpp:1888:10: warning: unused variable 'beta' [-Wunused-variable] double beta = 1 ; ^ BayesReversePLLH.cpp:1914:10: warning: unused variable 'betaprop' [-Wunused-variable] double betaprop=0; ^ BayesReversePLLH.cpp:1917:10: warning: unused variable 'svar' [-Wunused-variable] double svar=1; ^ BayesReversePLLH.cpp:1918:10: warning: unused variable 'Ints' [-Wunused-variable] double Ints=1; ^ BayesReversePLLH.cpp:1919:10: warning: unused variable 'Nums' [-Wunused-variable] double Nums=2; ^ BayesReversePLLH.cpp:1921:10: warning: unused variable 'mean2' [-Wunused-variable] double mean2=0; ^ BayesReversePLLH.cpp:1923:10: warning: unused variable 'mean1' [-Wunused-variable] double mean1=0; ^ BayesReversePLLH.cpp:1924:10: warning: unused variable 'Con' [-Wunused-variable] double Con=0; ^ BayesReversePLLH.cpp:1945:7: warning: unused variable 'which1' [-Wunused-variable] int which1=0; ^ BayesReversePLLH.cpp:1950:10: warning: unused variable 'bprop' [-Wunused-variable] double bprop=1; ^ BayesReversePLLH.cpp:1951:10: warning: unused variable 'Intb' [-Wunused-variable] double Intb=1; ^ BayesReversePLLH.cpp:1952:10: warning: unused variable 'Numb' [-Wunused-variable] double Numb=2; ^ BayesReversePLLH.cpp:1956:10: warning: unused variable 'prob1' [-Wunused-variable] double prob1=0; ^ BayesReversePLLH.cpp:1957:10: warning: unused variable 'med2' [-Wunused-variable] double med2=0; ^ BayesReversePLLH.cpp:2490:7: warning: unused variable 'b' [-Wunused-variable] int b=0; ^ BayesReversePLLH.cpp:2491:7: warning: unused variable 'k' [-Wunused-variable] int k=0; ^ BayesReversePLLH.cpp:2498:10: warning: unused variable 'beta' [-Wunused-variable] double beta = 1 ; ^ BayesReversePLLH.cpp:2524:10: warning: unused variable 'betaprop' [-Wunused-variable] double betaprop=0; ^ BayesReversePLLH.cpp:2527:10: warning: unused variable 'svar' [-Wunused-variable] double svar=1; ^ BayesReversePLLH.cpp:2528:10: warning: unused variable 'Ints' [-Wunused-variable] double Ints=1; ^ BayesReversePLLH.cpp:2529:10: warning: unused variable 'Nums' [-Wunused-variable] double Nums=2; ^ BayesReversePLLH.cpp:2531:10: warning: unused variable 'mean2' [-Wunused-variable] double mean2=0; ^ BayesReversePLLH.cpp:2533:10: warning: unused variable 'mean1' [-Wunused-variable] double mean1=0; ^ BayesReversePLLH.cpp:2534:10: warning: unused variable 'Con' [-Wunused-variable] double Con=0; ^ BayesReversePLLH.cpp:2555:7: warning: unused variable 'which1' [-Wunused-variable] int which1=0; ^ BayesReversePLLH.cpp:2560:10: warning: unused variable 'bprop' [-Wunused-variable] double bprop=1; ^ BayesReversePLLH.cpp:2561:10: warning: unused variable 'Intb' [-Wunused-variable] double Intb=1; ^ BayesReversePLLH.cpp:2562:10: warning: unused variable 'Numb' [-Wunused-variable] double Numb=2; ^ BayesReversePLLH.cpp:2566:10: warning: unused variable 'prob1' [-Wunused-variable] double prob1=0; ^ BayesReversePLLH.cpp:2567:10: warning: unused variable 'med2' [-Wunused-variable] double med2=0; ^ BayesReversePLLH.cpp:3092:7: warning: unused variable 'b' [-Wunused-variable] int b=0; ^ BayesReversePLLH.cpp:3100:10: warning: unused variable 'beta' [-Wunused-variable] double beta = 1 ; ^ BayesReversePLLH.cpp:3122:10: warning: unused variable 'betaprop' [-Wunused-variable] double betaprop=0; ^ BayesReversePLLH.cpp:3125:10: warning: unused variable 'svar' [-Wunused-variable] double svar=1; ^ BayesReversePLLH.cpp:3126:10: warning: unused variable 'Ints' [-Wunused-variable] double Ints=1; ^ BayesReversePLLH.cpp:3127:10: warning: unused variable 'Nums' [-Wunused-variable] double Nums=2; ^ BayesReversePLLH.cpp:3131:10: warning: unused variable 'mean1' [-Wunused-variable] double mean1=0; ^ BayesReversePLLH.cpp:3132:10: warning: unused variable 'Con' [-Wunused-variable] double Con=0; ^ BayesReversePLLH.cpp:3153:7: warning: unused variable 'which1' [-Wunused-variable] int which1=0; ^ BayesReversePLLH.cpp:3158:10: warning: unused variable 'bprop' [-Wunused-variable] double bprop=1; ^ BayesReversePLLH.cpp:3159:10: warning: unused variable 'Intb' [-Wunused-variable] double Intb=1; ^ BayesReversePLLH.cpp:3160:10: warning: unused variable 'Numb' [-Wunused-variable] double Numb=2; ^ BayesReversePLLH.cpp:3164:10: warning: unused variable 'prob1' [-Wunused-variable] double prob1=0; ^ BayesReversePLLH.cpp:3165:10: warning: unused variable 'med2' [-Wunused-variable] double med2=0; ^ BayesReversePLLH.cpp:3680:10: warning: unused variable 'PSpike' [-Wunused-variable] double PSpike=PSlab/(1-PSlab); ^ BayesReversePLLH.cpp:3686:7: warning: unused variable 'b' [-Wunused-variable] int b=0; ^ BayesReversePLLH.cpp:3687:7: warning: unused variable 'k' [-Wunused-variable] int k=0; ^ BayesReversePLLH.cpp:3727:7: warning: unused variable 'which1' [-Wunused-variable] int which1=0; ^ BayesReversePLLH.cpp:3732:10: warning: unused variable 'mean2' [-Wunused-variable] double mean2=0; ^ BayesReversePLLH.cpp:3738:10: warning: unused variable 'mean1' [-Wunused-variable] double mean1=0; ^ BayesReversePLLH.cpp:3739:10: warning: unused variable 'Con' [-Wunused-variable] double Con=0; ^ BayesReversePLLH.cpp:3798:10: warning: unused variable 'bprop' [-Wunused-variable] double bprop=1; ^ BayesReversePLLH.cpp:3799:10: warning: unused variable 'Intb' [-Wunused-variable] double Intb=1; ^ BayesReversePLLH.cpp:3800:10: warning: unused variable 'Numb' [-Wunused-variable] double Numb=2; ^ BayesReversePLLH.cpp:3804:10: warning: unused variable 'prob1' [-Wunused-variable] double prob1=0; ^ BayesReversePLLH.cpp:3805:10: warning: unused variable 'med2' [-Wunused-variable] double med2=0; ^ 88 warnings generated. clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o BayesReversePLLH.so BayesReversePLLH.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/BayesReversePLLH.Rcheck/00LOCK-BayesReversePLLH/00new/BayesReversePLLH/libs ** generating debug symbols (dSYM) ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesReversePLLH)