* installing *source* package ‘vectra’ ...
** this is package ‘vectra’ version ‘0.11.1’
** package ‘vectra’ successfully unpacked and MD5 sums checked
** using staged installation
configure: using pre-vendored src/tdc/
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c agg_ops.c -o agg_ops.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c agg_spill.c -o agg_spill.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c array.c -o array.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c batch.c -o batch.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c bed_scan.c -o bed_scan.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c block.c -o block.o
array.c:181:13: warning: unused variable 'src_bytes' [-Wunused-variable]
181 | int64_t src_bytes = (src_off + n + 7) >> 3;
| ^~~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c builder.c -o builder.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c byte_reader.c -o byte_reader.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c coerce.c -o coerce.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c collect.c -o collect.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c concat.c -o concat.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c csv_scan.c -o csv_scan.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c csv_write.c -o csv_write.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c dropcol.c -o dropcol.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c edt.c -o edt.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c error.c -o error.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr.c -o expr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_datetime.c -o expr_datetime.o
edt.c:81:9: warning: unused variable 'parallel' [-Wunused-variable]
81 | int parallel = (double)in_h * W > 20000.0;
| ^~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_geom.c -o expr_geom.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_seq.c -o expr_seq.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_string.c -o expr_string.o
expr_geom.c:207:9: warning: unused variable 'do_par' [-Wunused-variable]
207 | int do_par = (n > GEOM_PAR_THRESHOLD);
| ^~~~~~
expr_seq.c:131:9: warning: unused variable 'do_par' [-Wunused-variable]
131 | int do_par = (n > SEQ_PAR_THRESHOLD);
| ^~~~~~
expr_seq.c:223:9: warning: unused variable 'do_par' [-Wunused-variable]
223 | int do_par = (n > SEQ_PAR_THRESHOLD);
| ^~~~~~
expr_seq.c:305:9: warning: unused variable 'do_par' [-Wunused-variable]
305 | int do_par = (n > SEQ_PAR_THRESHOLD);
| ^~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_vec.c -o expr_vec.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c fasta_scan.c -o fasta_scan.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c feature_knn.c -o feature_knn.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c filter.c -o filter.o
expr_vec.c:118:9: warning: unused variable 'do_par' [-Wunused-variable]
118 | int do_par = (n > VEC_PAR_THRESHOLD);
| ^~~~~~
fasta_scan.c:46:20: warning: unused function 'gbuf_str' [-Wunused-function]
46 | static const char *gbuf_str(GBuf *g) {
| ^~~~~~~~
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c focal.c -o focal.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuzzy_join.c -o fuzzy_join.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c group_agg.c -o group_agg.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c group_topn.c -o group_topn.o
focal.c:121:9: warning: unused variable 'parallel' [-Wunused-variable]
121 | int parallel = (double)out_h * W * kh * kw > 50000.0;
| ^~~~~~~~
focal.c:209:9: warning: unused variable 'parallel' [-Wunused-variable]
209 | int parallel = (double)out_h * W > 20000.0;
| ^~~~~~~~
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c hash.c -o hash.o
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c interval_join.c -o interval_join.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c join.c -o join.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c join_partition.c -o join_partition.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c key_arena.c -o key_arena.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c key_snap.c -o key_snap.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c kmer.c -o kmer.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c libgeos.c -o libgeos.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c limit.c -o limit.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c network.c -o network.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c optimize.c -o optimize.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c project.c -o project.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge.c -o r_bridge.o
network.c:246:30: warning: '/*' within block comment [-Wcomment]
246 | /* pop the minimum into *outk/*outn; returns 0 when empty */
| ^
network.c:381:9: warning: unused variable 'nthreads' [-Wunused-variable]
381 | int nthreads = 1;
| ^~~~~~~~
network.c:516:9: warning: unused variable 'nthreads' [-Wunused-variable]
516 | int nthreads = 1;
| ^~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_core.c -o r_bridge_core.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_index.c -o r_bridge_index.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_io.c -o r_bridge_io.o
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_nodes.c -o r_bridge_nodes.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_raster.c -o r_bridge_raster.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c rasterize.c -o rasterize.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c rec_spill.c -o rec_spill.o
r_bridge_nodes.c:451:14: warning: variable 'method' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
451 | else if (method_int == 2) method = FUZZY_JW;
| ^~~~~~~~~~~~~~~
r_bridge_nodes.c:463:9: note: uninitialized use occurs here
463 | method, max_dist, n_threads,
| ^~~~~~
r_bridge_nodes.c:451:10: note: remove the 'if' if its condition is always true
451 | else if (method_int == 2) method = FUZZY_JW;
| ^~~~~~~~~~~~~~~~~~~~ ~
452 | else vectra_error("fuzzy_join: unknown method: %d", method_int);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_bridge_nodes.c:448:5: note: variable 'method' is declared here
448 | FuzzyMethod method;
| ^
r_bridge_nodes.c:524:14: warning: variable 'kind' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
524 | else if (strcmp(kind_str, "left") == 0) kind = IJOIN_LEFT;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_bridge_nodes.c:536:9: note: uninitialized use occurs here
536 | kind, closed, n_threads, suffix_y,
| ^~~~
r_bridge_nodes.c:524:10: note: remove the 'if' if its condition is always true
524 | else if (strcmp(kind_str, "left") == 0) kind = IJOIN_LEFT;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~
525 | else vectra_error("interval_join: unknown kind: %s", kind_str);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_bridge_nodes.c:522:5: note: variable 'kind' is declared here
522 | IntervalJoinKind kind;
| ^
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c rowid.c -o rowid.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c scalar_ops.c -o scalar_ops.o
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c scan.c -o scan.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c schema.c -o schema.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sort.c -o sort.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sql_scan.c -o sql_scan.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sql_write.c -o sql_write.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sqlite_format.c -o sqlite_format.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tiff_format.c -o tiff_format.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tiff_scan.c -o tiff_scan.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tiff_write.c -o tiff_write.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c topn.c -o topn.o
tiff_format.c:1947:19: warning: unused function 'tiff_entry_size' [-Wunused-function]
1947 | static inline int tiff_entry_size(const TiffWriter *w) {
| ^~~~~~~~~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vec_raster.c -o vec_raster.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr1_tdc.c -o vtr1_tdc.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_append.c -o vtr_append.o
vec_raster.c:2391:25: warning: unused variable 'n_pix' [-Wunused-variable]
2391 | int64_t n_pix = tw * th;
| ^~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_atomic_rename.c -o vtr_atomic_rename.o
vec_raster.c:308:13: warning: unused function 'vecr_codec_for' [-Wunused-function]
308 | static void vecr_codec_for(VecrCodec *c, uint8_t dt) {
| ^~~~~~~~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_codec_tdc.c -o vtr_codec_tdc.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_delete.c -o vtr_delete.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_diff.c -o vtr_diff.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_geos.c -o vtr_geos.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_overlay.c -o vtr_overlay.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_spatial.c -o vtr_spatial.o
vtr_overlay.c:312:9: warning: variable 'nthreads' set but not used [-Wunused-but-set-variable]
312 | int nthreads = (Rf_length(nthreads_sexp) > 0) ? INTEGER(nthreads_sexp)[0] : 0;
| ^
vtr_spatial.c:267:9: warning: unused variable 'nt' [-Wunused-variable]
267 | int nt = resolve_threads(nthreads_sexp, m);
| ^~
vtr_spatial.c:339:9: warning: unused variable 'nt' [-Wunused-variable]
339 | int nt = resolve_threads(nthreads_sexp, m);
| ^~
vtr_spatial.c:434:9: warning: unused variable 'nt' [-Wunused-variable]
434 | int nt = resolve_threads(nthreads_sexp, m);
| ^~
vtr_spatial.c:505:9: warning: unused variable 'nt' [-Wunused-variable]
505 | int nt = resolve_threads(nthreads_sexp, m);
| ^~
vtr_spatial.c:635:9: warning: unused variable 'nt' [-Wunused-variable]
635 | int nt = resolve_threads(nthreads_sexp, m);
| ^~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_write.c -o vtr_write.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtri.c -o vtri.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c warp.c -o warp.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c window.c -o window.o
5 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode.c -o tdc/src/api/decode.o
warp.c:75:9: warning: unused variable 'parallel' [-Wunused-variable]
75 | int parallel = (double)n > 20000.0;
| ^~~~~~~~
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_dict.c -o tdc/src/api/decode_dict.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_ex.c -o tdc/src/api/decode_ex.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_impl.c -o tdc/src/api/decode_impl.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_into.c -o tdc/src/api/decode_into.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_varlen.c -o tdc/src/api/decode_varlen.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/encode.c -o tdc/src/api/encode.o
tdc/src/api/decode_impl.c:344:16: warning: unused variable 'raw_mib' [-Wunused-variable]
344 | double raw_mib = (double)raw / (1024.0 * 1024.0);
| ^~~~~~~
tdc/src/api/decode_impl.c:345:21: warning: unused variable 'tag' [-Wunused-variable]
345 | const char *tag = timer_tag ? timer_tag : "dec ";
| ^~~
tdc/src/api/decode_impl.c:210:12: warning: variable 't_entropy' set but not used [-Wunused-but-set-variable]
210 | double2 warnings generated.
t_entropy = 0.0, t_xform = 0.0, t_model = 0.0;
| ^
tdc/src/api/decode_impl.c:210:29: warning: variable 't_xform' set but not used [-Wunused-but-set-variable]
210 | double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0;
| ^
tdc/src/api/decode_impl.c:210:44: warning: variable 't_model' set but not used [-Wunused-but-set-variable]
210 | double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0;
| ^
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/pushpull_decode.c -o tdc/src/api/pushpull_decode.o
tdc/src/api/encode.c:289:17: warning: unused variable 'raw_mib' [-Wunused-variable]
289 | double raw_mib = (double)raw / (1024.0 * 1024.0);
| ^~~~~~~
tdc/src/api/encode.c:126:12: warning: variable 't_model' set but not used [-Wunused-but-set-variable]
126 | double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0;
| ^
tdc/src/api/encode.c:126:27: warning: variable 't_xform' set but not used [-Wunused-but-set-variable]
126 | double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0;
| ^
tdc/src/api/encode.c:126:42: warning: variable 't_entropy' set but not used [-Wunused-but-set-variable]
126 | double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0;
| ^
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/pushpull_encode.c -o tdc/src/api/pushpull_encode.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/stream_decode.c -o tdc/src/api/stream_decode.o
5 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/stream_encode.c -o tdc/src/api/stream_encode.o
tdc/src/api/pushpull_encode.c:66:14: warning: unused function 'pp_alloc' [-Wunused-function]
66 | static void *pp_alloc(tdc_pushpull_encoder *e, void *p, size_t sz) {
| ^~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/arena.c -o tdc/src/core/arena.o
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/block.c -o tdc/src/core/block.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/decode_profile.c -o tdc/src/core/decode_profile.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/error.c -o tdc/src/core/error.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/registry.c -o tdc/src/core/registry.o
tdc/src/core/decode_profile.c:53:16: warning: unused variable 'pct' [-Wunused-variable]
53 | double pct = 100.0 * (double)tdc_dp_cycles[i] / (double)total;
| ^~~
tdc/src/core/decode_profile.c:54:16: warning: unused variable 'cps' [-Wunused-variable]
54 | double cps = tdc_dp_n_seqs_total
| ^~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/stream.c -o tdc/src/core/stream.o
tdc/src/core/decode_profile.c:72:20: warning: unused variable 'pct' [-Wunused-variable]
72 | double pct = 100.0 * (double)tdc_dp_off_hist[i] / (double)hsum;
| ^~~
tdc/src/core/decode_profile.c:65:28: warning: unused variable 'labels' [-Wunused-variable]
65 | static const char *labels[8] = {
| ^~~~~~
tdc/src/core/decode_profile.c:44:24: warning: unused variable 'names' [-Wunused-variable]
44 | static const char *names[TDC_DP_NSEC] = {
| ^~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/version.c -o tdc/src/core/version.o
5 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/deflate.c -o tdc/src/entropy/deflate.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/fse.c -o tdc/src/entropy/fse.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/huffman.c -o tdc/src/entropy/huffman.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/huffman4.c -o tdc/src/entropy/huffman4.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lane.c -o tdc/src/entropy/lane.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lz.c -o tdc/src/entropy/lz.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lz_opt.c -o tdc/src/entropy/lz_opt.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lz_streams.c -o tdc/src/entropy/lz_streams.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/mf_btree.c -o tdc/src/entropy/mf_btree.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/mf_hashchain.c -o tdc/src/entropy/mf_hashchain.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/none.c -o tdc/src/entropy/none.o
tdc/src/entropy/lz_streams.c:1233:22: warning: variable 'p_extra' set but not used [-Wunused-but-set-variable]
1233 | uint32_t p_extra = 0;
| ^
tdc/src/entropy/lz_streams.c:1346:18: warning: variable 'll_extra_bits' set but not used [-Wunused-but-set-variable]
1346 | uint32_t ll_extra_bits = 0, ml_extra_bits = 0, off_extra_bits = 0;
| ^
tdc/src/entropy/lz_streams.c:1346:37: warning: variable 'ml_extra_bits' set but not used [-Wunused-but-set-variable]
1346 | uint32_t ll_extra_bits = 0, ml_extra_bits = 0, off_extra_bits = 0;
| ^
tdc/src/entropy/lz_streams.c:1347:18: warning: variable 'n_repcodes' set but not used [-Wunused-but-set-variable]
1347 | uint32_t n_repcodes = 0;
| ^
tdc/src/entropy/lz_streams.c:1565:16: warning: unused variable 't_other' [-Wunused-variable]
1565 | double t_other = t_entropy - t_lit_ctx;
| ^~~~~~~
tdc/src/entropy/lz_streams.c:1566:16: warning: unused variable 't_total' [-Wunused-variable]
1566 | double t_total = t_initial + t_priced + t_build + t_entropy;
| ^~~~~~~
tdc/src/entropy/lz_streams.c:1582:18: warning: unused variable 'total_enc' [-Wunused-variable]
1582 | uint32_t total_enc = (uint32_t)LZS_HEADER_SIZE_V2
| ^~~~~~~~~
tdc/src/entropy/lz_streams.c:1584:21: warning: unused variable 'lit_mode' [-Wunused-variable]
1584 | const char *lit_mode = use_lit_ctx ? "CTX" : id_name[id_lit];
| ^~~~~~~~
tdc/src/entropy/lz_opt.c:915:16: warning: unused variable 't_end' [-Wunused-variable]
915 | double t_end = tdc_now_secs();
| ^~~~~
tdc/src/entropy/lz_opt.c:917:18: warning: unused variable 'cnt_work' [-Wunused-variable]
917 | uint64_t cnt_work = cnt_total - cnt_skip - cnt_inf;
| ^~~~~~~~
tdc/src/entropy/lz_opt.c:670:18: warning: unused variable 't_start' [-Wunused-variable]
670 | const double t_start = timing ? tdc_now_secs() : 0.0;
| ^~~~~~~
tdc/src/entropy/lz_opt.c:700:18: warning: unused variable 't_init' [-Wunused-variable]
700 | const double t_init = timing ? tdc_now_secs() : 0.0;
| ^~~~~~
tdc/src/entropy/lz_opt.c:703:41: warning: variable 'cnt_rep_skip' set but not used [-Wunused-but-set-variable]
703 | uint64_t cnt_skip = 0, cnt_inf = 0, cnt_rep_skip = 0;
| ^
tdc/src/entropy/lz_opt.c:704:14: warning: variable 'cnt_chain' set but not used [-Wunused-but-set-variable]
704 | uint64_t cnt_chain = 0, cnt_chain_skip = 0;
| ^
tdc/src/entropy/lz_opt.c:704:29: warning: variable 'cnt_chain_skip' set but not used [-Wunused-but-set-variable]
704 | uint64_t cnt_chain = 0, cnt_chain_skip = 0;
| ^
tdc/src/entropy/lz_opt.c:705:14: warning: variable 'rep_bytes' set but not used [-Wunused-but-set-variable]
705 | uint64_t rep_bytes = 0, rep_calls = 0;
| ^
tdc/src/entropy/lz_opt.c:705:29: warning: variable 'rep_calls' set but not used [-Wunused-but-set-variable]
705 | uint64_t rep_bytes = 0, rep_calls = 0;
| ^
tdc/src/entropy/lz_opt.c:864:18: warning: unused variable 't_loop' [-Wunused-variable]
864 | const double t_loop = timing ? tdc_now_secs() : 0.0;
| ^~~~~~
tdc/src/entropy/lz_streams.c:365:24: warning: unused function 'lzs_bits_read' [-Wunused-function]
365 | static inline uint32_t lzs_bits_read(const uint8_t *buf, uint32_t *bit_pos,
| ^~~~~~~~~~~~~
tdc/src/entropy/lz_streams.c:533:13: warning: unused function 'lzs_shuffle_u32' [-Wunused-function]
533 | static void lzs_shuffle_u32(const uint32_t *src, uint32_t n, uint8_t *dst) {
| ^~~~~~~~~~~~~~~
tdc/src/entropy/lz_streams.c:1736:24: warning: unused function 'lzs_br_read_fast' [-Wunused-function]
1736 | static inline uint32_t lzs_br_read_fast(lzs_br *br, uint32_t nb) {
| ^~~~~~~~~~~~~~~~
tdc/src/entropy/lz_streams.c:2061:19: warning: unused function 'lzs_reconstruct_symbols' [-Wunused-function]
2061 | static tdc_status lzs_reconstruct_symbols(const uint8_t *ll_dec,
| ^~~~~~~~~~~~~~~~~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/block_record.c -o tdc/src/format/block_record.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/header.c -o tdc/src/format/header.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/metadata.c -o tdc/src/format/metadata.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/rowgroup.c -o tdc/src/format/rowgroup.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/schema.c -o tdc/src/format/schema.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/stats.c -o tdc/src/format/stats.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/layout/tiling.c -o tdc/src/layout/tiling.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/layout/traverse.c -o tdc/src/layout/traverse.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/delta1d.c -o tdc/src/model/delta1d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/delta2_1d.c -o tdc/src/model/delta2_1d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/dict.c -o tdc/src/model/dict.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/dict_numeric.c -o tdc/src/model/dict_numeric.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/fpc1d.c -o tdc/src/model/fpc1d.o
10 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/plane2d.c -o tdc/src/model/plane2d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/pred2d.c -o tdc/src/model/pred2d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/pred3d.c -o tdc/src/model/pred3d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/pred3d_float.c -o tdc/src/model/pred3d_float.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/quantize_pred2d.c -o tdc/src/model/quantize_pred2d.o
tdc/src/model/plane2d.c:764:18: warning: variable 'n_nonzero' set but not used [-Wunused-but-set-variable]
764 | uint64_t n_nonzero = 0;
| ^
tdc/src/model/plane2d.c:765:18: warning: variable 'energy' set but not used [-Wunused-but-set-variable]
765 | uint64_t energy = 0;
| ^
12 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/raw.c -o tdc/src/model/raw.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/sparse_zero_1d.c -o tdc/src/model/sparse_zero_1d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/stack2d.c -o tdc/src/model/stack2d.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/symbols/residuals.c -o tdc/src/symbols/residuals.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/symbols/runs.c -o tdc/src/symbols/runs.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/bitshuffle.c -o tdc/src/transform/bitshuffle.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/complement.c -o tdc/src/transform/complement.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/quantize.c -o tdc/src/transform/quantize.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/shuffle.c -o tdc/src/transform/shuffle.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/zigzag.c -o tdc/src/transform/zigzag.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/libgeos/include' -I/opt/R/arm64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c miniz/miniz.c -o miniz/miniz.o
2 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o vectra.so agg_ops.o agg_spill.o array.o batch.o bed_scan.o block.o builder.o byte_reader.o coerce.o collect.o concat.o csv_scan.o csv_write.o dropcol.o edt.o error.o expr.o expr_datetime.o expr_geom.o expr_seq.o expr_string.o expr_vec.o fasta_scan.o feature_knn.o filter.o focal.o fuzzy_join.o group_agg.o group_topn.o hash.o init.o interval_join.o join.o join_partition.o key_arena.o key_snap.o kmer.o libgeos.o limit.o network.o optimize.o project.o r_bridge.o r_bridge_core.o r_bridge_index.o r_bridge_io.o r_bridge_nodes.o r_bridge_raster.o rasterize.o rec_spill.o rowid.o scalar_ops.o scan.o schema.o sort.o sql_scan.o sql_write.o sqlite_format.o tiff_format.o tiff_scan.o tiff_write.o topn.o vec_raster.o vtr1_tdc.o vtr_append.o vtr_atomic_rename.o vtr_codec_tdc.o vtr_delete.o vtr_diff.o vtr_geos.o vtr_overlay.o vtr_spatial.o vtr_write.o vtri.o warp.o window.o tdc/src/api/decode.o tdc/src/api/decode_dict.o tdc/src/api/decode_ex.o tdc/src/api/decode_impl.o tdc/src/api/decode_into.o tdc/src/api/decode_varlen.o tdc/src/api/encode.o tdc/src/api/pushpull_decode.o tdc/src/api/pushpull_encode.o tdc/src/api/stream_decode.o tdc/src/api/stream_encode.o tdc/src/core/arena.o tdc/src/core/block.o tdc/src/core/decode_profile.o tdc/src/core/error.o tdc/src/core/registry.o tdc/src/core/stream.o tdc/src/core/version.o tdc/src/entropy/deflate.o tdc/src/entropy/fse.o tdc/src/entropy/huffman.o tdc/src/entropy/huffman4.o tdc/src/entropy/lane.o tdc/src/entropy/lz.o tdc/src/entropy/lz_opt.o tdc/src/entropy/lz_streams.o tdc/src/entropy/mf_btree.o tdc/src/entropy/mf_hashchain.o tdc/src/entropy/none.o tdc/src/format/block_record.o tdc/src/format/header.o tdc/src/format/metadata.o tdc/src/format/rowgroup.o tdc/src/format/schema.o tdc/src/format/stats.o tdc/src/layout/tiling.o tdc/src/layout/traverse.o tdc/src/model/delta1d.o tdc/src/model/delta2_1d.o tdc/src/model/dict.o tdc/src/model/dict_numeric.o tdc/src/model/fpc1d.o tdc/src/model/plane2d.o tdc/src/model/pred2d.o tdc/src/model/pred3d.o tdc/src/model/pred3d_float.o tdc/src/model/quantize_pred2d.o tdc/src/model/raw.o tdc/src/model/sparse_zero_1d.o tdc/src/model/stack2d.o tdc/src/symbols/residuals.o tdc/src/symbols/runs.o tdc/src/transform/bitshuffle.o tdc/src/transform/complement.o tdc/src/transform/quantize.o tdc/src/transform/shuffle.o tdc/src/transform/zigzag.o miniz/miniz.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/vectra.Rcheck/00LOCK-vectra/00new/vectra/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vectra)