• using R version 4.3.0 beta (2023-04-10 r84212)
• using platform: aarch64-apple-darwin20 (64-bit)
• R was compiled by
      Apple clang version 14.0.0 (clang-1400.0.29.202)
      GNU Fortran (GCC) 12.2.0
• running under: macOS Big Sur 11.6.7
• using session charset: UTF-8
• checking for file ‘speaq/DESCRIPTION’ ... OK
• this is package ‘speaq’ version ‘2.7.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘speaq’ can be installed ... [4s/5s] OK
  See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] ERROR
  Running examples in ‘speaq-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: BWR
  > ### Title: BW ratio calculation
  > ### Aliases: BWR
  >
  > ### ** Examples
  >
  > res=makeSimulatedData();
  > X=res$data;
  > groupLabel=res$label;
  > peakList <- detectSpecPeaks(X,
  + nDivRange = c(128),
  + scales = seq(1, 16, 2),
  + baselineThresh = 50000,
  + SNR.Th = -1,
  + verbose=FALSE
  + );
  > resFindRef<- findRef(peakList);
  > refInd <- resFindRef$refInd;
  > maxShift = 50;
  > Y <- dohCluster(X,
  + peakList = peakList,
  + refInd = refInd,
  + maxShift = maxShift,
  + acceptLostPeak = TRUE, verbose=FALSE);
  Warning in min(peakList) :
    no non-missing arguments to min; returning Inf
  Warning in max(peakList) :
    no non-missing arguments to max; returning -Inf
  Error in startP:(minpeakList - 1) : result would be too long a vector
  Calls: dohCluster -> .withMaxShift -> hClustAlign
  Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [0s/0s] NONE
    ‘classic_speaq_vignette.Rmd’ using ‘UTF-8’... [0s/0s] OK
    ‘speaq2_illustrations.Rmd’ using ‘UTF-8’... [0s/0s] OK
• checking re-building of vignette outputs ... [9s/12s] ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘classic_speaq_vignette.Rmd’ using rmarkdown
  Quitting from lines 111-120 (classic_speaq_vignette.Rmd)
  Error: processing vignette 'classic_speaq_vignette.Rmd' failed with diagnostics:
  result would be too long a vector
  --- failed re-building ‘classic_speaq_vignette.Rmd’
  
  --- re-building ‘speaq2_illustrations.Rmd’ using rmarkdown
  Quitting from lines 71-83 (speaq2_illustrations.Rmd)
  Error: processing vignette 'speaq2_illustrations.Rmd' failed with diagnostics:
  invalid 'times' argument
  --- failed re-building ‘speaq2_illustrations.Rmd’
  
  SUMMARY: processing the following files failed:
    ‘classic_speaq_vignette.Rmd’ ‘speaq2_illustrations.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... [5s/6s] OK
• DONE
  Status: 2 ERRORs
• using check arguments '--no-clean-on-error '