* installing *source* package ‘sparsediff’ ...
** this is package ‘sparsediff’ version ‘0.4.0’
** package ‘sparsediff’ successfully unpacked and MD5 sums checked
** using staged installation
sparsediff: ccache not found; compiling without it
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cblas_shim.c -o cblas_shim.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cpp11.cpp -o cpp11.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediff.cpp -o sparsediff.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/expr.c -o sparsediffengine/src/expr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/problem.c -o sparsediffengine/src/problem.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/old-code/linear_op.c -o sparsediffengine/src/old-code/linear_op.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/old-code/old_CSR.c -o sparsediffengine/src/old-code/old_CSR.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/old-code/old_CSR_sum.c -o sparsediffengine/src/old-code/old_CSR_sum.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/old-code/old_permuted_dense.c -o sparsediffengine/src/old-code/old_permuted_dense.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/COO_matrix.c -o sparsediffengine/src/utils/COO_matrix.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/CSC_matrix.c -o sparsediffengine/src/utils/CSC_matrix.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/CSR_matrix.c -o sparsediffengine/src/utils/CSR_matrix.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/CSR_sum.c -o sparsediffengine/src/utils/CSR_sum.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/int_double_pair.c -o sparsediffengine/src/utils/int_double_pair.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/linalg_dense_sparse_matmuls.c -o sparsediffengine/src/utils/linalg_dense_sparse_matmuls.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/linalg_sparse_matmuls.c -o sparsediffengine/src/utils/linalg_sparse_matmuls.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/matrix_BTA.c -o sparsediffengine/src/utils/matrix_BTA.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/matrix_sum.c -o sparsediffengine/src/utils/matrix_sum.o
sparsediffengine/src/utils/linalg_sparse_matmuls.c:59:22: warning: unused function 'sparse_dot_offset' [-Wunused-function]
59 | static inline double sparse_dot_offset(const double *a_x, const int *a_idx,
| ^~~~~~~~~~~~~~~~~
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/mini_numpy.c -o sparsediffengine/src/utils/mini_numpy.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/permuted_dense.c -o sparsediffengine/src/utils/permuted_dense.o
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/sparse_matrix.c -o sparsediffengine/src/utils/sparse_matrix.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/tracked_alloc.c -o sparsediffengine/src/utils/tracked_alloc.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/utils/utils.c -o sparsediffengine/src/utils/utils.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/add.c -o sparsediffengine/src/atoms/affine/add.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/broadcast.c -o sparsediffengine/src/atoms/affine/broadcast.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/convolve.c -o sparsediffengine/src/atoms/affine/convolve.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/diag_mat.c -o sparsediffengine/src/atoms/affine/diag_mat.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/diag_vec.c -o sparsediffengine/src/atoms/affine/diag_vec.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/hstack.c -o sparsediffengine/src/atoms/affine/hstack.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/index.c -o sparsediffengine/src/atoms/affine/index.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/left_matmul.c -o sparsediffengine/src/atoms/affine/left_matmul.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/neg.c -o sparsediffengine/src/atoms/affine/neg.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/parameter.c -o sparsediffengine/src/atoms/affine/parameter.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/promote.c -o sparsediffengine/src/atoms/affine/promote.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/reshape.c -o sparsediffengine/src/atoms/affine/reshape.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/right_matmul.c -o sparsediffengine/src/atoms/affine/right_matmul.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/scalar_mult.c -o sparsediffengine/src/atoms/affine/scalar_mult.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/sum.c -o sparsediffengine/src/atoms/affine/sum.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/trace.c -o sparsediffengine/src/atoms/affine/trace.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/transpose.c -o sparsediffengine/src/atoms/affine/transpose.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/upper_tri.c -o sparsediffengine/src/atoms/affine/upper_tri.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/variable.c -o sparsediffengine/src/atoms/affine/variable.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/vector_mult.c -o sparsediffengine/src/atoms/affine/vector_mult.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/affine/vstack.c -o sparsediffengine/src/atoms/affine/vstack.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/bivariate_full_dom/matmul.c -o sparsediffengine/src/atoms/bivariate_full_dom/matmul.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/bivariate_full_dom/multiply.c -o sparsediffengine/src/atoms/bivariate_full_dom/multiply.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/bivariate_restricted_dom/quad_over_lin.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/quad_over_lin.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_scalar_vector.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_scalar_vector.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_vector_scalar.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_vector_scalar.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/common.c -o sparsediffengine/src/atoms/elementwise_full_dom/common.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/exp.c -o sparsediffengine/src/atoms/elementwise_full_dom/exp.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/hyperbolic.c -o sparsediffengine/src/atoms/elementwise_full_dom/hyperbolic.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/logistic.c -o sparsediffengine/src/atoms/elementwise_full_dom/logistic.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/normal_cdf.c -o sparsediffengine/src/atoms/elementwise_full_dom/normal_cdf.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/power.c -o sparsediffengine/src/atoms/elementwise_full_dom/power.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/trig.c -o sparsediffengine/src/atoms/elementwise_full_dom/trig.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_full_dom/xexp.c -o sparsediffengine/src/atoms/elementwise_full_dom/xexp.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_restricted_dom/atanh.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/atanh.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_restricted_dom/common.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/common.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_restricted_dom/entr.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/entr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_restricted_dom/log.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/log.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/elementwise_restricted_dom/tan.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/tan.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/other/prod.c -o sparsediffengine/src/atoms/other/prod.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/other/prod_axis_one.c -o sparsediffengine/src/atoms/other/prod_axis_one.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/other/prod_axis_zero.c -o sparsediffengine/src/atoms/other/prod_axis_zero.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparsediffengine/src/atoms/other/quad_form.c -o sparsediffengine/src/atoms/other/quad_form.o
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o sparsediff.so cblas_shim.o cpp11.o sparsediff.o sparsediffengine/src/expr.o sparsediffengine/src/problem.o sparsediffengine/src/old-code/linear_op.o sparsediffengine/src/old-code/old_CSR.o sparsediffengine/src/old-code/old_CSR_sum.o sparsediffengine/src/old-code/old_permuted_dense.o sparsediffengine/src/utils/COO_matrix.o sparsediffengine/src/utils/CSC_matrix.o sparsediffengine/src/utils/CSR_matrix.o sparsediffengine/src/utils/CSR_sum.o sparsediffengine/src/utils/int_double_pair.o sparsediffengine/src/utils/linalg_dense_sparse_matmuls.o sparsediffengine/src/utils/linalg_sparse_matmuls.o sparsediffengine/src/utils/matrix_BTA.o sparsediffengine/src/utils/matrix_sum.o sparsediffengine/src/utils/mini_numpy.o sparsediffengine/src/utils/permuted_dense.o sparsediffengine/src/utils/sparse_matrix.o sparsediffengine/src/utils/tracked_alloc.o sparsediffengine/src/utils/utils.o sparsediffengine/src/atoms/affine/add.o sparsediffengine/src/atoms/affine/broadcast.o sparsediffengine/src/atoms/affine/convolve.o sparsediffengine/src/atoms/affine/diag_mat.o sparsediffengine/src/atoms/affine/diag_vec.o sparsediffengine/src/atoms/affine/hstack.o sparsediffengine/src/atoms/affine/index.o sparsediffengine/src/atoms/affine/left_matmul.o sparsediffengine/src/atoms/affine/neg.o sparsediffengine/src/atoms/affine/parameter.o sparsediffengine/src/atoms/affine/promote.o sparsediffengine/src/atoms/affine/reshape.o sparsediffengine/src/atoms/affine/right_matmul.o sparsediffengine/src/atoms/affine/scalar_mult.o sparsediffengine/src/atoms/affine/sum.o sparsediffengine/src/atoms/affine/trace.o sparsediffengine/src/atoms/affine/transpose.o sparsediffengine/src/atoms/affine/upper_tri.o sparsediffengine/src/atoms/affine/variable.o sparsediffengine/src/atoms/affine/vector_mult.o sparsediffengine/src/atoms/affine/vstack.o sparsediffengine/src/atoms/bivariate_full_dom/matmul.o sparsediffengine/src/atoms/bivariate_full_dom/multiply.o sparsediffengine/src/atoms/bivariate_restricted_dom/quad_over_lin.o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr.o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_scalar_vector.o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_vector_scalar.o sparsediffengine/src/atoms/elementwise_full_dom/common.o sparsediffengine/src/atoms/elementwise_full_dom/exp.o sparsediffengine/src/atoms/elementwise_full_dom/hyperbolic.o sparsediffengine/src/atoms/elementwise_full_dom/logistic.o sparsediffengine/src/atoms/elementwise_full_dom/normal_cdf.o sparsediffengine/src/atoms/elementwise_full_dom/power.o sparsediffengine/src/atoms/elementwise_full_dom/trig.o sparsediffengine/src/atoms/elementwise_full_dom/xexp.o sparsediffengine/src/atoms/elementwise_restricted_dom/atanh.o sparsediffengine/src/atoms/elementwise_restricted_dom/common.o sparsediffengine/src/atoms/elementwise_restricted_dom/entr.o sparsediffengine/src/atoms/elementwise_restricted_dom/log.o sparsediffengine/src/atoms/elementwise_restricted_dom/tan.o sparsediffengine/src/atoms/other/prod.o sparsediffengine/src/atoms/other/prod_axis_one.o sparsediffengine/src/atoms/other/prod_axis_zero.o sparsediffengine/src/atoms/other/quad_form.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/sparsediff.Rcheck/00LOCK-sparsediff/00new/sparsediff/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparsediff)