* installing *source* package ‘sf’ ...
** this is package ‘sf’ version ‘1.1-0’
** package ‘sf’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: clang -arch arm64 -std=gnu2x
configure: CXX: clang++ -arch arm64 -std=gnu++17
checking for gdal-config... /opt/R/arm64/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.8.5
checking GDAL version >= 2.0.1... yes
checking for gcc... clang -arch arm64 -std=gnu2x
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 -std=gnu2x accepts -g... yes
checking for clang -arch arm64 -std=gnu2x option to enable C11 features... -std=gnu11
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /opt/R/arm64/share/gdal/pcs.csv readable... no
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.8.5
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.5.1
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
proj_conf_test.c:3:10: fatal error: 'proj.h' file not found
#include <proj.h>
^~~~~~~~
1 error generated.
checking for geos-config... /opt/R/arm64/bin/geos-config
checking geos-config usability... yes
configure: GEOS: 3.13.0
checking GEOS version >= 3.4.0... yes
checking for geos_c.h... yes
checking geos: linking with -L/opt/R/arm64/lib -lgeos_c... no
checking geos: linking with -L/opt/R/arm64/lib -lgeos_c -lgeos -lstdc++ -lm... yes
configure: Package CPP flags: -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include
configure: Package LIBS: -L/opt/R/arm64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz -lcurl -L/opt/R/arm64/lib -lgdal -liconv -lodbcinst -lssl -lcrypto -llzma -ldeflate -llz4 -lgeotiff -lzstd -ljpeg -lpng -lnetcdf -lblosc -lwebp -ldf -lmfhdf -lz -lopenjp2 -lpcre2-8 -lpq -lodbc -lfreexl -lexpat -lxml2 -lgeos_c -lgeos -lproj -lm -ldl -lsqlite3 -ltiff -lcurl -lc++ -lpq -lpgcommon -lpgport -lm -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz -lnetcdf -lhdf5_hl -lhdf5 -lm -lz -lbz2 -lzstd -lxml2 -lcurl -lsz -lhdf5_hl -lhdf5 -lm -lz -lbz2 -lzstd -lxml2 -lcurl -lsz -L/opt/R/arm64/lib -lgeos_c -lgeos -lstdc++ -lm
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bbox.cpp -o bbox.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdal.cpp -o gdal.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_geom.cpp -o gdal_geom.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_read.cpp -o gdal_read.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_read_stream.cpp -o gdal_read_stream.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_utils.cpp -o gdal_utils.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_write.cpp -o gdal_write.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c geos.cpp -o geos.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hex.cpp -o hex.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mdim.cpp -o mdim.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ops.cpp -o ops.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c polygonize.cpp -o polygonize.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c proj.cpp -o proj.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c proj_info.cpp -o proj_info.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c raster2sf.cpp -o raster2sf.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sfc-sfg.cpp -o sfc-sfg.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c signed_area.cpp -o signed_area.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c stars.cpp -o stars.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wkb.cpp -o wkb.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c zm_range.cpp -o zm_range.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_read_stream.o gdal_utils.o gdal_write.o geos.o hex.o mdim.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfc-sfg.o signed_area.o stars.o wkb.o zm_range.o -L/opt/R/arm64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz -lcurl -L/opt/R/arm64/lib -lgdal -liconv -lodbcinst -lssl -lcrypto -llzma -ldeflate -llz4 -lgeotiff -lzstd -ljpeg -lpng -lnetcdf -lblosc -lwebp -ldf -lmfhdf -lz -lopenjp2 -lpcre2-8 -lpq -lodbc -lfreexl -lexpat -lxml2 -lgeos_c -lgeos -lproj -lm -ldl -lsqlite3 -ltiff -lcurl -lc++ -lpq -lpgcommon -lpgport -lm -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz -lnetcdf -lhdf5_hl -lhdf5 -lm -lz -lbz2 -lzstd -lxml2 -lcurl -lsz -lhdf5_hl -lhdf5 -lm -lz -lbz2 -lzstd -lxml2 -lcurl -lsz -L/opt/R/arm64/lib -lgeos_c -lgeos -lstdc++ -lm -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/sf.Rcheck/00LOCK-sf/00new/sf/libs
** generating debug symbols (dSYM)
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
in method for ‘dbWriteTable’ with signature ‘"PostgreSQLConnection","character","sf"’: no definition for class “PostgreSQLConnection”
in method for ‘dbDataType’ with signature ‘"PostgreSQLConnection","sf"’: no definition for class “PostgreSQLConnection”
in method for ‘coerce’ with signature ‘"Spatial","sf"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"Spatial","sfc"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"sf","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"sfc","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"XY","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"crs","CRS"’: no definition for class “CRS”
in method for ‘coerce’ with signature ‘"sgbp","sparseMatrix"’: no definition for class “sparseMatrix”
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sf)