* installing *source* package ‘sequoia’ ...
** package ‘sequoia’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c MkRelA.f90 -o MkRelA.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c Sequoia.f90 -o Sequoia.o
Sequoia.f90:6291:45:
6291 | Bj, w, l, x, g, y, z, i, r,u,j,e,Ei,m, catX, PAx, DoQuickB
| 1
Warning: Unused variable ‘catx’ declared at (1) [-Wunused-variable]
Sequoia.f90:9214:87:
9214 | integer :: x, j, fsx(maxSibSize), k,m,r, nCG(2,2), candGP(mxCP,2,2), SAB(2), ix, xx(10)
| 1
Warning: Unused variable ‘xx’ declared at (1) [-Wunused-variable]
Sequoia.f90:1179:42:
1179 | double precision :: IndBYtmp(1:nYears,2,5)
| 1
Warning: Unused variable ‘indbytmp’ declared at (1) [-Wunused-variable]
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c SimGenoErrors.f90 -o SimGenoErrors.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c ester.f90 -o ester.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o sequoia.so MkRelA.o Sequoia.o SimGenoErrors.o ester.o init.o -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _erstop_: register 24 saved somewhere other than in frame
ld: warning: could not create compact unwind for ___global_MOD_rprint: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for ___global_MOD_getap: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _prepagedata_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _allocarrays_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _estbyrange_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _pairqhs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairqfs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _getancest_: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _chkancest_: register 24 saved somewhere other than in frame
ld: warning: could not create compact unwind for _pairqpo_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcopphomall_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _calcopphom_: registers 21 and 22 not saved contiguously in frame
ld: warning: could not create compact unwind for _isselfed_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _checkselfed_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _calcagelr_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _parprob_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _ester_calcll_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _ester_parprob_: register 20 saved somewhere other than in frame
ld: warning: could not create compact unwind for _ester_getoff_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _estg_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _ester_getgenerations_: register 24 saved somewhere other than in frame
ld: warning: could not create compact unwind for _estallg_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _ester_calcprobs_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _ester_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _getrel_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _mkerrors_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcp2_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _qfs_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _calclind_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _qfsgp_: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _getbyrank_c_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _qgp_: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _getfocal_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _getoff_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _oppmerge_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _lla2llr_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _triohsgp_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _trioha_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _trioggp_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _triofa_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _triohs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _triofs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _clusthsha_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _fshc_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _mergesibs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _fsmerge_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _addhaselfed_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcalrmerge_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairhscc_: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairhsha_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairdhc_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairhsgp_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairhspo_: registers 21 and 22 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairfsselfed_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairfsha_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairpoha_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _getpoconfigs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _fax_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairga_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _findee_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _chkdoquick_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _addggp_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _addparent_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _dummyhfa_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _parenthfs_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _addgau_: register 77 saved somewhere other than in frame
ld: warning: could not create compact unwind for _pairua_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _connected_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _chktoomanysibs_: register 22 saved somewhere other than in frame
ld: warning: could not create compact unwind for _calccll_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _chkvalidpar_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairpox_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _updatell_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _uclust_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _estagedif_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _upair_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcu_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _addfa_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _triogp_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _pairhshai_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairfaha_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _hsmating_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _addsibinbr_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _makefs_: registers 21 and 22 not saved contiguously in frame
ld: warning: could not create compact unwind for _readinputped_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _doadd_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _removefs_: register 24 saved somewhere other than in frame
ld: warning: could not create compact unwind for _removesib_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _setpartmp_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairpo_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _qpo_: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _addgp_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairgp_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairggp_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _addfs_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _addsib_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _sibchk_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _dummygp_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _checkmerge_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _gpfilter_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calc4u_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcpx2_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _pairhalfsib_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _pairfullsib_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _paircc_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _checkadd_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _checkpair_: register 79 saved somewhere other than in frame
ld: warning: could not create compact unwind for _findpairs_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _checkrel_: register 28 saved somewhere other than in frame
ld: warning: could not create compact unwind for _checkmayberev_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calccandparll_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcpogpz_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _checkparentpair_: register 28 saved somewhere other than in frame
ld: warning: could not create compact unwind for _triads_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _calcbysibs_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _calcbydown_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcbyup_: registers 74 and 75 not saved contiguously in frame
ld: warning: could not create compact unwind for _setestby_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _setpar_: registers 21 and 22 not saved contiguously in frame
ld: warning: could not create compact unwind for _chkgps_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _domerge_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _checkdropsibship_: register 20 saved somewhere other than in frame
ld: warning: could not create compact unwind for _sibparent_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _newsibship_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _updatemate_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _dofsmerge_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _clustering_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _checkmono_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _selectparent_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _parentage_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _fsibsgps_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _sibgrandparents_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _getgenerations_: register 24 saved somewhere other than in frame
ld: warning: could not create compact unwind for _getrank_i_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _updateallprobs_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _calcparentllr_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _moreparent_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _ggpairs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _checkpedigree_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _sibships_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _parents_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _precalcprobs_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _initiate_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _makeped_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _duplicates_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _findambig_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _getpedllr_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _getpairll_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _getbyprobs_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _calcpo2_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _qfsmerge_: registers 25 and 26 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/sequoia.Rcheck/00LOCK-sequoia/00new/sequoia/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sequoia)