- using R version 4.5.2 Patched (2026-01-31 r89382)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.7.8
- using session charset: UTF-8
- checking for file ‘savvySh/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘savvySh’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘savvySh’ can be installed ... [2s/3s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/2s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] ERROR
Running examples in ‘savvySh-Ex.R’ failed
The error most likely occurred in:
> ### Name: coef.savvySh_model
> ### Title: Extract Coefficients for a Slab and Shrinkage Linear Regression
> ### Model
> ### Aliases: coef.savvySh_model
>
> ### ** Examples
>
> # Generate simulated data for example
> set.seed(123)
> x <- matrix(rnorm(100 * 5), 100, 5)
> y <- rnorm(100)
>
> # Fit a Multiplicative shrinkage model
> fit <- savvySh(x, y, model_class = "Multiplicative", include_Sh = TRUE)
Error in pd.solve(Sigma_lambda) : x appears to be not symmetric
Calls: savvySh -> pd.solve
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [1s/1s] ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(savvySh)
>
> test_check("savvySh")
Saving _problems/test-savvySh.main-19.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 126 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-savvySh.main.R:17:3'): savvySh function handles input validation correctly ──
Error in `pd.solve(Sigma_lambda)`: x appears to be not symmetric
Backtrace:
▆
1. ├─testthat::capture_warnings(savvySh(x[1:5, ], y[1:5], model_class = "Multiplicative")) at test-savvySh.main.R:17:3
2. │ └─base::withCallingHandlers(...)
3. └─savvySh::savvySh(x[1:5, ], y[1:5], model_class = "Multiplicative")
4. └─mnormt::pd.solve(Sigma_lambda)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 126 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5s/5s] OK
- checking PDF version of manual ... [2s/2s] OK
- DONE
Status: 2 ERRORs
- using check arguments '--no-clean-on-error '