* installing *source* package ‘rxode2lincmt’ ...
** this is package ‘rxode2lincmt’ version ‘0.1.0’
** package ‘rxode2lincmt’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include
RCPP=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include
EG=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include
SH=-I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src'
CXX_STD = CXX17
################################################################################
## Package library flags.
PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS)
# Same optimization and Stan/Eigen defines as rxode2 had, so the moved
# kernels produce bitwise identical results.
PKG_CFLAGS = -O3 -fno-math-errno -mtune=native
PKG_CXXFLAGS = -O3 -fno-math-errno -mtune=native $(SHLIB_OPENMP_CXXFLAGS) -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"$(BH)" -I"$(EG)" $(SH) -I"$(RCPP)" -DEIGEN_DONT_PARALLELIZE
--------[end src/Makevars]--------
** libs
specified C++17
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++17
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src' -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -fPIC -falign-functions=64 -Wall -g -O2 -c host.c -o host.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src' -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c linCmt.cpp -o linCmt.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src' -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c macros2micros.cpp -o macros2micros.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -fPIC -falign-functions=64 -Wall -g -O2 -c ptr.c -o ptr.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src' -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c rxDerived.cpp -o rxDerived.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I/opt/R/arm64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src' -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c solComp.cpp -o solComp.o
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from macros2micros.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from macros2micros.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from rxDerived.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from rxDerived.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~In file included from rxDerived.cppIn file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from In file included from :7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hppmacros2micros.cpp:716:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob.hpp:7:
:16:
:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hppIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp::20: warning: 52:52:20:unused variable 'p_val_flip' [-Wunused-variable]
20: warning: 52 | unused variable 'p_val_flip' [-Wunused-variable]
: c warning: unused variable 'p_val_flip' [-Wunused-variable]
52 52 | | ons constt doub const dle p_val_flip = oublep_v p_val_flal < 0.5 ? p_val doubip =le p p_val < 0:_ 1.0.5 ? p - p_val;_val : 1.0 - p_val;
| ^~~~~~~~~~val_f
li/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]p = p_
| ^~~~~~~~~~
val <42 | c 0.5 /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18onst dou? p_vb: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
lal : 42 | e sqrt_inv_ibeta_m1 = sqrt(in cv(onsibet 1.0 - p_vat double l;
| ^~~~~~~~~~
a_argsqrt_inv_ib/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
e 42 | c) - 1t.0)a_;
| ^~~~~~~~~~~~~~~~~
onst dm1 = sqrt(inv(ibeta_arg) ouble sqrt_inv_i- 1beta_m1 =.0);
sq | ^~~~~~~~~~~~~~~~~
rt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from macros2micros.cpp:7In file included from rxDerived.cpp:7In file included from :
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:In file included from solComp.cpp:327:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
linCmt.cpp:
::11 In file included from In file included from warning: unused variable 'function' [-Wunused-variable]
:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:18:
In file included from ./linCmt.h:74/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim.hpp | st/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
:418a 74:
In file included from ./macros2micros.h::
| tIn file included from i/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob.hppc:8:
290In file included from sc/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math.hpptonst:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:ea:19:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/rev.hpp:1832xpr const cha: twarning: unused variable 'function' [-Wunused-variable]
r 74 | ic constexp:
* frsIn file included from unction /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim.hpp:t18:
In file included from actic constexpr co=n "/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob.hppo:student_t_qf";
290| ^~~~~~~~
n:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]sst char* func
t char* function = "student_t_qf";
| tion ^~~~~~~~
74 | static constex= "student_t_qf";
| ^~~~~~~~
pr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from rxDerived.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from macros2micros.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from macros2micros.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from rxDerived.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from solComp.cpp:8:
In file included from ./solComp.h:12:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from solComp.cpp:8:
In file included from ./solComp.h:12:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
8 warnings generated.
8 warnings generated.
8 warnings generated.
8 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rxode2lincmt.so RcppExports.o host.o init.o linCmt.o macros2micros.o ptr.o rxDerived.o solComp.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/rxode2lincmt.Rcheck/00LOCK-rxode2lincmt/00new/rxode2lincmt/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2lincmt)