* installing *source* package ‘ribiosUtils’ ... ** this is package ‘ribiosUtils’ version ‘1.7.7’ ** package ‘ribiosUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.1.sdk’ clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c affyfileHandler.c -o affyfileHandler.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c algutil.c -o algutil.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c alphatrans.c -o alphatrans.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c arg.c -o arg.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c array.c -o array.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c avlTree.c -o avlTree.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c binalgparser.c -o binalgparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c bitmap.c -o bitmap.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c biurl.c -o biurl.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c blastdb.c -o blastdb.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c blastparser.c -o blastparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c chemutil.c -o chemutil.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c combi.c -o combi.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c eval.c -o eval.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c forest.c -o forest.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c format.c -o format.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuzzparser.c -o fuzzparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c geometry.c -o geometry.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c graphalgo.c -o graphalgo.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c graphics.c -o graphics.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c hash.c -o hash.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c hierclus.c -o hierclus.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c hlrmisc.c -o hlrmisc.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c hmmparser.c -o hmmparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c html.c -o html.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c htmlform.c -o htmlform.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c linestream.c -o linestream.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c lnk.c -o lnk.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c log.c -o log.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c matvec.c -o matvec.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c msfparser.c -o msfparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c pagedesign.c -o pagedesign.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c patternmatch.c -o patternmatch.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c pearsonfastaparser.c -o pearsonfastaparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c phraplightparser.c -o phraplightparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c plabla.c -o plabla.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c primer3parser.c -o primer3parser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c properties.c -o properties.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c pwdecode.c -o pwdecode.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_endec.c -o r_endec.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_mmatch.c -o r_mmatch.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_trim.c -o r_trim.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c rdbu.c -o rdbu.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c recipes.c -o recipes.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c seqautil.c -o seqautil.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c sequenceAlignment.c -o sequenceAlignment.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c sequtil.c -o sequtil.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c statistics.c -o statistics.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c stringlist.c -o stringlist.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c wiseparser.c -o wiseparser.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c wwwsession.c -o wwwsession.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c xmlbuilder.c -o xmlbuilder.o clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I../inst/include -fPIC -falign-functions=64 -Wall -g -O2 -c xmlparser.c -o xmlparser.o clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o ribiosUtils.so affyfileHandler.o algutil.o alphatrans.o arg.o array.o avlTree.o binalgparser.o bitmap.o biurl.o blastdb.o blastparser.o chemutil.o combi.o eval.o forest.o format.o fuzzparser.o geometry.o graphalgo.o graphics.o hash.o hierclus.o hlrmisc.o hmmparser.o html.o htmlform.o init.o linestream.o lnk.o log.o matvec.o msfparser.o pagedesign.o patternmatch.o pearsonfastaparser.o phraplightparser.o plabla.o primer3parser.o properties.o pwdecode.o r_endec.o r_mmatch.o r_trim.o rdbu.o recipes.o seqautil.o sequenceAlignment.o sequtil.o statistics.o stringlist.o wiseparser.o wwwsession.o xmlbuilder.o xmlparser.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/ribiosUtils.Rcheck/00LOCK-ribiosUtils/00new/ribiosUtils/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ribiosUtils)