- using R version 4.6.1 Patched (2026-07-29 r90332)
- using platform: aarch64-apple-darwin23
- R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
- running under: macOS Sequoia 15.7.1
- using session charset: UTF-8
* current time: 2026-07-31 23:01:01 UTC
- checking for file ‘rLakeHabitat/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘rLakeHabitat’ version ‘1.0.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘rLakeHabitat’ can be installed ... [8s/11s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/6s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/4s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [64s/64s] OK
Running ‘testthat.R’ [64s/64s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/9s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘rLakeHabitat_Introduction.Rmd’ using rmarkdown
Quitting from rLakeHabitat_Introduction.Rmd:135-178 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `geom_sf()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error:
! number of columns of matrices must match (see arg 2)
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2:::by_layer(...)
10. ├─rlang::try_fetch(...)
11. │ ├─base::tryCatch(...)
12. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
13. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
14. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
15. │ └─base::withCallingHandlers(...)
16. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
17. └─l$draw_geom(d, layout)
18. └─ggplot2 (local) draw_geom(..., self = self)
19. └─self$geom$draw_layer(...)
20. └─ggplot2 (local) draw_layer(..., self = self)
21. └─base::lapply(...)
22. └─ggplot2 (local) FUN(X[[i]], ...)
23. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
24. └─self$draw_panel(data, panel_params, coord, na.rm = FALSE, legend = "other")
25. └─ggplot2 (local) draw_panel(..., self = self)
26. ├─sf::st_as_grob(data$geometry, pch = data$shape, gp = gp, arrow = arrow)
27. └─sf:::st_as_grob.sfc_MULTIPOLYGON(...)
28. ├─base::do.call(rbind, x)
29. └─base (local) `<fn>`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rLakeHabitat_Introduction.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error:
! number of columns of matrices must match (see arg 2)
--- failed re-building ‘rLakeHabitat_Introduction.Rmd’
SUMMARY: processing the following file failed:
‘rLakeHabitat_Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [2s/2s] OK
- DONE
Status: 1 ERROR