• using R version 4.3.0 alpha (2023-03-31 r84137)
  • using platform: aarch64-apple-darwin20 (64-bit)
  • R was compiled by
        Apple clang version 14.0.0 (clang-1400.0.29.202)
        GNU Fortran (GCC) 12.2.0
  • running under: macOS Big Sur 11.6.7
  • using session charset: UTF-8
  • checking for file ‘pcalg/DESCRIPTION’ ... OK
  • this is package ‘pcalg’ version ‘2.7-8’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘pcalg’ can be installed ... [34s/36s] OK
  • used C compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’
  • used C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’
  • used SDK: ‘MacOSX11.3.sdk’
  • checking C++ specification ... NOTE
      Specified C++11: please drop specification unless essential
  • checking installed package size ... NOTE
      installed size is 11.6Mb
      sub-directories of 1Mb or more:
        data 2.1Mb
        libs 6.8Mb
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/1s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the package can be unloaded cleanly ... [1s/1s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
  • checking loading without being on the library search path ... [1s/1s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [10s/11s] OK
  • checking Rd files ... [1s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in shell scripts ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking compilation flags in Makevars ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking use of PKG_*FLAGS in Makefiles ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [12s/14s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [59s/66s] OK
      Running ‘test_LINGAM.R’ [1s/1s]
      Running ‘test_addBgKnowledge.R’ [1s/1s]
      Running ‘test_adjustment.R’ [2s/2s]
      Running ‘test_ages.R’ [1s/1s]
      Running ‘test_amat2dag.R’ [1s/1s]
      Running ‘test_arges.R’ [1s/1s]
      Running ‘test_backdoor.R’ [3s/4s]
      Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK
      Running ‘test_bicscore.R’ [1s/1s]
      Running ‘test_causalEffect.R’ [1s/1s]
      Running ‘test_coercion.R’ [1s/1s]
      Running ‘test_compareGraphs.R’ [1s/1s]
      Running ‘test_dag2cpdag.R’ [1s/1s]
      Running ‘test_dag2essgraph.R’ [1s/1s]
      Running ‘test_displayAmat.R’ [1s/1s]
      Running ‘test_dsep.R’ [1s/1s]
      Running ‘test_dsepAM.R’ [1s/1s]
      Running ‘test_dsepAMTest.R’ [1s/1s]
      Running ‘test_fci.R’ [1s/1s]
      Running ‘test_fciPlus.R’ [1s/1s]
      Running ‘test_gSquareBin.R’ [1s/1s]
      Running ‘test_gSquareDis.R’ [2s/2s]
      Running ‘test_gac.R’ [1s/2s]
      Running ‘test_getNextSet.R’ [1s/1s]
      Running ‘test_gies.R’ [1s/2s]
      Running ‘test_ida.R’ [3s/3s]
      Running ‘test_idaFast.R’ [2s/2s]
      Running ‘test_isValidGraph.R’ [1s/2s]
      Running ‘test_jointIda.R’ [1s/1s]
      Running ‘test_mat2targets.R’ [1s/1s]
      Running ‘test_optAdjSet.R’ [1s/1s]
      Running ‘test_opttarget.R’ [1s/1s]
      Running ‘test_pag2anc.R’ [1s/1s]
      Running ‘test_pag2conf.R’ [1s/1s]
      Running ‘test_pag2edge.R’ [1s/1s]
      Running ‘test_pc.R’ [1s/1s]
      Running ‘test_pcSelect.R’ [2s/2s]
      Running ‘test_pcalg2dagitty.R’ [1s/1s]
      Running ‘test_pcorOrder.R’ [1s/1s]
      Running ‘test_pdag2allDags.R’ [1s/1s]
      Running ‘test_pdag2dag.R’ [1s/1s]
      Running ‘test_possDeAn.R’ [1s/1s]
      Running ‘test_randDAG.R’ [2s/2s]
      Comparing ‘test_randDAG.Rout’ to ‘test_randDAG.Rout.save’ ... OK
      Running ‘test_randomDAG.R’ [1s/1s]
      Running ‘test_rfci.R’ [2s/2s]
      Running ‘test_rmvDAG.R’ [1s/1s]
      Running ‘test_searchAM.R’ [1s/1s]
      Running ‘test_shd.R’ [1s/1s]
      Running ‘test_skeleton.R’ [1s/2s]
      Running ‘test_udag2pag.R’ [1s/1s]
      Running ‘test_udag2pdag.R’ [2s/2s]
      Running ‘test_wgtMatrix.R’ [1s/1s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [10s/11s] OK
      ‘vignette2018.Rnw’ using ‘UTF-8’... [10s/11s] OK
  • checking re-building of vignette outputs ... [20s/21s] OK
  • checking PDF version of manual ... [7s/8s] OK
  • DONE
    Status: 2 NOTEs
  • using check arguments '--no-clean-on-error '