• using R version 4.5.0 beta (2025-03-29 r88069)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘pcalg/DESCRIPTION’ ... OK
• this is package ‘pcalg’ version ‘2.7-12’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pcalg’ can be installed ... [28s/33s] OK See the install log for details.
• used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking installed package size ... INFO   installed size is 11.3Mb   sub-directories of 1Mb or more:     data 2.1Mb     libs 6.5Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [60s/81s] OK   Running ‘test_LINGAM.R’ [1s/2s]   Running ‘test_addBgKnowledge.R’ [1s/1s]   Running ‘test_adjustment.R’ [2s/2s]   Running ‘test_ages.R’ [1s/1s]   Running ‘test_amat2dag.R’ [1s/1s]   Running ‘test_arges.R’ [1s/1s]   Running ‘test_backdoor.R’ [3s/4s]   Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK   Running ‘test_bicscore.R’ [1s/1s]   Running ‘test_causalEffect.R’ [1s/1s]   Running ‘test_coercion.R’ [1s/1s]   Running ‘test_compareGraphs.R’ [1s/1s]   Running ‘test_dag2cpdag.R’ [1s/1s]   Running ‘test_dag2essgraph.R’ [1s/1s]   Running ‘test_displayAmat.R’ [1s/1s]   Running ‘test_dsep.R’ [1s/1s]   Running ‘test_dsepAM.R’ [1s/1s]   Running ‘test_dsepAMTest.R’ [1s/1s]   Running ‘test_fci.R’ [1s/1s]   Running ‘test_fciPlus.R’ [1s/1s]   Running ‘test_gSquareBin.R’ [1s/1s]   Running ‘test_gSquareDis.R’ [2s/2s]   Running ‘test_gac.R’ [2s/2s]   Running ‘test_getNextSet.R’ [1s/1s]   Running ‘test_gies.R’ [1s/2s]   Running ‘test_ida.R’ [4s/5s]   Running ‘test_idaFast.R’ [2s/3s]   Running ‘test_isValidGraph.R’ [2s/2s]   Running ‘test_jointIda.R’ [1s/1s]   Running ‘test_mat2targets.R’ [1s/1s]   Running ‘test_optAdjSet.R’ [1s/1s]   Running ‘test_opttarget.R’ [1s/1s]   Running ‘test_pag2anc.R’ [1s/1s]   Running ‘test_pag2conf.R’ [1s/1s]   Running ‘test_pag2edge.R’ [1s/1s]   Running ‘test_pc.R’ [1s/2s]   Running ‘test_pcSelect.R’ [2s/3s]   Running ‘test_pcalg2dagitty.R’ [1s/2s]   Running ‘test_pcorOrder.R’ [1s/1s]   Running ‘test_pdag2allDags.R’ [1s/1s]   Running ‘test_pdag2dag.R’ [1s/1s]   Running ‘test_possDeAn.R’ [1s/1s]   Running ‘test_randDAG.R’ [2s/2s]   Running ‘test_randomDAG.R’ [1s/1s]   Running ‘test_rfci.R’ [2s/2s]   Running ‘test_rmvDAG.R’ [1s/1s]   Running ‘test_searchAM.R’ [1s/1s]   Running ‘test_shd.R’ [1s/1s]   Running ‘test_skeleton.R’ [2s/2s]   Running ‘test_udag2pag.R’ [1s/1s]   Running ‘test_udag2pdag.R’ [2s/3s]   Running ‘test_wgtMatrix.R’ [1s/1s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [22s/30s] OK
• checking PDF version of manual ... [8s/10s] OK
• DONE Status: OK
• using check arguments '--no-clean-on-error '