* installing *source* package ‘nlmixr2est’ ...
** this is package ‘nlmixr2est’ version ‘6.0.1’
** package ‘nlmixr2est’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
ARMA=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include
BH=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include
RCPP=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include
RXP=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include
CXX_STD = CXX17
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)
PKG_CXXFLAGS = -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"$(BH)" -I"$(RCPP)" -I"$(ARMA)" -I"$(RXP)" $(SHLIB_OPENMP_CXXFLAGS) -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP
SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS)
SHLIB_LD = $(SHLIB_CXXLD)
SOURCES_C = init.c rprintf.c merge3.c lbfgsR.c utilc.c
SOURCES_CPP = uninformativeEtas.cpp nlm.cpp filterNormalLike.cpp inner.cpp shi21.cpp nearPD.cpp censEst.cpp saem.cpp expandNlme.cpp npde.cpp shrink.cpp ires.cpp res.cpp cwres.cpp censResid.cpp cholse.cpp neldermead.cpp resid.cpp slice.cpp RcppExportMod.cpp RcppExports.cpp rxcmp.cpp
OBJECTS = $(SOURCES_CPP:.cpp=.o) $(SOURCES_C:.c=.o)
all: $(SHLIB)
$(SHLIB): $(OBJECTS)
--------[end src/Makevars]--------
** libs
specified C++17
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++17
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c uninformativeEtas.cpp -o uninformativeEtas.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c nlm.cpp -o nlm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c filterNormalLike.cpp -o filterNormalLike.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c inner.cpp -o inner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c shi21.cpp -o shi21.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c nearPD.cpp -o nearPD.o
In file included from shi21.cpp:11:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed pIn file included from filterNormalLike.cpp:10:
roble./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
m 4 | #define ARMA_DONTs
| ^
_<command line>USE_OPE:6:9: In file included from NIn file included from note: previous definition is here
uninformativeEtas.cppM: 2nlm.cppIn file included from inner.cpp:5:
./armahead.h:4:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
:In file included from 6nearPD.cpp:
4:P | 4./armahead.h5:
: ./armahead.h | 9##/ded:/efine ARMfineA_DON ::warning: T_U4'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]Known tS4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
:9:AE
o warning: R'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]M_A _O
D 4 | #dOefine ARMN 4 T | 4_cUauAPS | E_s##eOPEN_ENMP /M/dP edefinesf Dpeed1iKnowAne ONT An _RUSpRrobl
| MA_EtDONT_ ^o MA
cU_ems
| ^O_a
DONT_USE_SE_OPENMP /PEuNO<command line>:6:9: note: previous definition is here
PENMP // Kn 6 | #define oMP // Knows/n to Awn to cacR Known to cause speeaeud MA_DON pT_se spsuUSE_OPEpreed probseoNlblemMems
| ePes spe
^
e1<command line>
:6:d9: d pro | ^
b note: lpremprevious definition is here
| ^
6 | obles
| ^
<command line>:ms
#6:9: note: previous definition is here
d<command line>:6:9: note: previous definition is here
6 | #define ARMA_ 6 | # | ^efine ARMA_defi
DDONT_USEOne_NTO<command line>_ UP:6:9: note: previous definition is here
SE_OPENENMP 1
| ^ARMA_DMP 1
| ^
6 | ONT_USE_OPE#define ARMA_DONTNMP 1
| ^
_USE_OPENMP 1
| ^
In file included from In file included from nearPD.cppfilterNormalLike.cppIn file included from :In file included from uninformativeEtas.cpp:2In file included from inner.cpp:5:
:10nlm.cpp:
In file included from ./armahead.h:5In file included from 13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4shi21.cpp::
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:44In file included from :
./armahead.h:
:
:
:In file included from 11:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.hIn file included from ./armahead.h::13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:In file included from ./armahead.h:135858::
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h::
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h::
4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h58:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h9:
:9:
In file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:2558:
In file included from 9In file included from :
:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.hIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:
:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h25:
:::
29In file included from 25/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:
:29In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
:
:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore26:
::61:2926:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:
In file included from :
In file included from :273/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:27361/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:
:25:
:13: warning: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse::In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h::26variable 'count' set but not used [-Wunused-but-set-variable]:29
27313: 26 :
:13::
:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h273warning: variable 'count' set but not used [-Wunused-but-set-variable]
| :273:13In file included from :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore : I273 | warning: warning: nvariable 'count' set but not used [-Wunused-but-set-variable]
variable 'count' set but not used [-Wunused-but-set-variable]: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:61
dex cou:
273 | 273In/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h 273 | n In :t13: d Ide:enxx warning: variable 'count' set but not used [-Wunused-but-set-variable]
d=273e :13 x count = 0;
| ^
0cc;
:o owarning: variable 'count' set but not used [-Wunused-but-set-variable]
| 273 | ^u
unt = 0;
| ^
n 273 | Index count = 0;
| ^
t = I 0;
| ^
ndex count = 0;
| ^
In file included from nearPD.cpp:5:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.hIn file included from filterNormalLike.cpp:10:
In file included from In file included from nlm.cpp:4:
In file included from ./armahead.h:13./armahead.hIn file included from In file included from inner.cpp:In file included from uninformativeEtas.cpp:
:13In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
::5:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:
2In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
shi21.cpp:
:11:
In file included from 9In file included from In file included from ::
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h./armahead.hIn file included from ::58/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from 4:
In file included from :13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:In file included from :
:
./armahead.h:1358In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.hIn file included from 9:
:78::
In file included from 25:
9In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h::
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:In file included from :29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h4 warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]::29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h25:
In file included from :58:
:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35In file included from :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:29:
78 | :
Index78 ns:
:9In file included from 9:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h uper_::
25:warning: :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseIn file included from variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:
et_p:929:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:o/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h29st = 0; : :
:25/In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35warning: 78 | / Number :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9:
29of relaxevariable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29 :I:
dIn file included from
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:
:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9 35 : warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
warning: :
nvariable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:d7878:9: s | 78warning: |
variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]n o Idnex ns78e Ide | Inx nsuperds in poston_dex nsuper_eteter__dere
po uxp78 | ds etrp et nree
_= sost et_post = 0; // Numbupe| ^
e/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.hr of relaxed = 0; /sr_et_post =0; // 0; // Num/:79:9Ibno Nn de:umber of relaxed snodes xN d nsupiumn poesrewarning: _es in ebtvariable 'nsuper_et' set but not used [-Wunused-but-set-variable]_ptpostorr d
oeo 79 | ered sf rord teIt = 0; // rree
| ^
Numebnlede e/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79xo n:srrfaxu 9 reed etr:l peeeer warning: odaxedf_variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
e snodesstnodes in relp79 | Indexosta inx
| e d ons por ^ss
nodes in pos=/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9 upertder: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
0; order_te// Numbeod rdeet =e79 | etr ored f e relaree
| ^
tree
| ^x
Id etrn/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79e/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h0ee:79:9: :d; warning: //dex 9snsuper_et = 0; /
variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
n : warning: No uvariable 'nsuper_et' set but not used [-Wunused-but-set-variable]/
79| ^
m/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h des i79 | n t | b :ehIn79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]eIr onNdfex ns
or duper_umber of r et = 0eirelax; ela79 | ginal etre xe/xIndex nsu/ Nd epesumbenodesr nsuper_ r ofe
rid| ^
n the ori_ eget = 0;et = 0; // N // slaxed sNinodes unimberumber of relaxe n d snodes in thenal etreothedes of relaxedor iginal etree e s nodes in toih
n the
| ^
r e original etree origi
iginal et | ^
ree
| ^
nal etree
| ^
| ^
In file included from nlm.cpp:4:
In file included from ./armahead.h:13:
In file included from uninformativeEtas.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.hIn file included from In file included from inner.cpp:5:
:In file included from In file included from ./armahead.hnearPD.cpp:13:
In file included from In file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h31In file included from shi21.cpp:11:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:5In file included from ./armahead.h:filterNormalLike.cpp13:10:
::
4In file included from ./armahead.h::
:
:
In file included from ./armahead.h:13:
4In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h::
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:13In file included from 58:72:10: warning: :
58:
In file included from variable 'replacements' set but not used [-Wunused-but-set-variable]
:
9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h 7225/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h | In file included from IndIn file included from :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h::4:
:9:
4:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.heIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h::In file included from :31x/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h: repl:
58In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:a:
5846:
In file included from :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:729:
:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:c25:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
:
:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h10/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.hIn file included from :72:10: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:warning: :31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
eIn file included from 9: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.hvariable 'replacements' set but not used [-Wunused-but-set-variable]:
In file included from m/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72::/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25
e 72nts =72:
72 | 10 | : warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
IIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:nd10 ex rep: l0a7231:
In file included from Index: warning: ; variable 'replacements' set but not used [-Wunused-but-set-variable]ceme
|
72 | /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers rep:lac nInd Ie| ^
46exmtn:
s = 0;
de/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]| nts = 0
ereplacements;x
72 | ^
| = 0;
| Ireplace ^
n ^
dex mereplacemennts = 0;
| ^
ts = 0;
| ^
In file included from filterNormalLike.cpp:10:
In file included from ./armahead.h:In file included from shi21.cpp:11:
In file included from ./armahead.h:13:
13In file included from In file included from In file included from uninformativeEtas.cpp:2:
nearPD.cpp:5:
In file included from ./armahead.h:In file included from nlm.cpp:
13:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.hIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h./armahead.h:13:
In file included from :4In file included from ::4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h4inner.cpp:5:
In file included from ./armahead.h:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
:13:
In file included from :In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.hIn file included from :
In file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:4:
./armahead.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h58:
:58In file included from In file included from :
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h134:
58:
:9:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
:25:
In file included from :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.hIn file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:In file included from :In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:374:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58589:
:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:In file included from :45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h9::
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h::
:
37246:7:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h37:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:37:
In file included from :
In file included from :9:
:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45 9/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtraIn file included from :45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:
warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
| ^
In file included from :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.hIn file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h246/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:45:
| 25:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
:
246 :
246 | intIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.hIn file included from :: int cou737/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
:
nIn file included from t/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra = 0;:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7 c
::o warning: variable 'count' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h 246 | | :u int 246 count =nt = 0warning: variable 'count' set but not used [-Wunused-but-set-variable];
| ^
^ 246 | int cou0;
n:7: warning: t | ^
variable 'count' set but not used [-Wunused-but-set-variable]
246 | int
count = 0;
| ^
= 0;
| ^
nlm.cpp:451:7: warning: unused variable 'cores' [-Wunused-variable]
451 | int cores = getOpCores(op);
| ^~~~~
nlm.cpp:608:7: warning: unused variable 'cores' [-Wunused-variable]
608 | int cores = getOpCores(op);
| ^~~~~
nlm.cpp:691:12: warning: unused variable 'llik' [-Wunused-variable]
691 | double llik;
| ^~~~
inner.cpp:3795:26: warning: variable 'k' set but not used [-Wunused-but-set-variable]
3795 | unsigned int i, j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0, iLO=0;
| ^
inner.cpp:3795:59: warning: variable 'iH' set but not used [-Wunused-but-set-variable]
3795 | unsigned int i, j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0, iLO=0;
| ^
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c censEst.cpp -o censEst.o
6 warnings generated.
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c saem.cpp -o saem.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c expandNlme.cpp -o expandNlme.o
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c npde.cpp -o npde.o
In file included from npde.cpp:2:
In file included from ./npde.h:7:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c shrink.cpp -o shrink.o
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c ires.cpp -o ires.o
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c res.cpp -o res.o
In file included from res.cpp:2:
In file included from ./res.h:4:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
In file included from saem.cpp:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from saem.cpp:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from saem.cpp:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:7:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:7:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:7:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from saem.cpp:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from npde.cpp:2:
In file included from ./npde.h:7:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
npde.cpp:130:15: warning: variable 'hi' set but not used [-Wunused-but-set-variable]
130 | double low, hi, low2, hi2;
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from shrink.cpp:2:
In file included from ./shrink.h:5:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from ires.cpp:2:
In file included from ./ires.h:4:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from res.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
res.cpp:11:7: warning: unused variable 'idSize' [-Wunused-variable]
11 | int idSize = ID.size();
| ^~~~~~
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c cwres.cpp -o cwres.o
In file included from cwres.cpp:2:
In file included from ./res.h:4:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
7 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c censResid.cpp -o censResid.o
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c cholse.cpp -o cholse.o
In file included from cholse.cpp:2:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
7 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c neldermead.cpp -o neldermead.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c resid.cpp -o resid.o
In file included from resid.cpp:2:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from cwres.cpp:2:
In file included from ./res.h:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from censResid.cpp:2:
In file included from ./censResid.h:3:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from cholse.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c slice.cpp -o slice.o
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from resid.cpp:2:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExportMod.cpp -o RcppExportMod.o
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -fPIC -falign-functions=64 -Wall -g -O2 -c rxcmp.cpp -o rxcmp.o
In file included from rxcmp.cpp:4:
./armahead.h:4:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems
| ^
<command line>:6:9: note: previous definition is here
6 | #define ARMA_DONT_USE_OPENMP 1
| ^
6 warnings generated.
5 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rprintf.c -o rprintf.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c merge3.c -o merge3.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lbfgsR.c -o lbfgsR.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/n1qn1/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lbfgsb3c/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/lotri/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utilc.c -o utilc.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ./../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from rxcmp.cpp:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from rxcmp.cpp:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from rxcmp.cpp:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from rxcmp.cpp:4:
In file included from ./armahead.h:13:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2ptr.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2.h:58:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rxode2/include/rxode2_RcppExports.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
6 warnings generated.
8 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o nlmixr2est.so uninformativeEtas.o nlm.o filterNormalLike.o inner.o shi21.o nearPD.o censEst.o saem.o expandNlme.o npde.o shrink.o ires.o res.o cwres.o censResid.o cholse.o neldermead.o resid.o slice.o RcppExportMod.o RcppExports.o rxcmp.o init.o rprintf.o merge3.o lbfgsR.o utilc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/nlmixr2est.Rcheck/00LOCK-nlmixr2est/00new/nlmixr2est/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nlmixr2est)