Install log for 'mkde'

* installing *source* package ‘mkde’ ...
** package ‘mkde’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mkdeFunctions.cpp -o mkdeFunctions.o
mkdeFunctions.cpp:296:32: warning: unused variable 'voxy' [-Wunused-variable]
                        double voxy = yGrid[i2]; // voxel y
                               ^
mkdeFunctions.cpp:246:45: warning: unused variable 'xyterm' [-Wunused-variable]
    double distMaxXY, xyDistSq, voxx, voxy, xyterm;
                                            ^
mkdeFunctions.cpp:246:39: warning: unused variable 'voxy' [-Wunused-variable]
    double distMaxXY, xyDistSq, voxx, voxy, xyterm;
                                      ^
mkdeFunctions.cpp:246:33: warning: unused variable 'voxx' [-Wunused-variable]
    double distMaxXY, xyDistSq, voxx, voxy, xyterm;
                                ^
mkdeFunctions.cpp:246:23: warning: unused variable 'xyDistSq' [-Wunused-variable]
    double distMaxXY, xyDistSq, voxx, voxy, xyterm;
                      ^
mkdeFunctions.cpp:245:20: warning: variable 'sig2xy_inv' set but not used [-Wunused-but-set-variable]
    double sig2xy, sig2xy_inv;
                   ^
mkdeFunctions.cpp:462:32: warning: unused variable 'voxy' [-Wunused-variable]
                        double voxy = yGrid[i2]; // voxel y
                               ^
mkdeFunctions.cpp:398:21: warning: unused variable 'i1max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0;
                    ^
mkdeFunctions.cpp:398:9: warning: unused variable 'i1min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0;
        ^
mkdeFunctions.cpp:398:32: warning: unused variable 'i2min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0;
                               ^
mkdeFunctions.cpp:398:44: warning: unused variable 'i2max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0;
                                           ^
mkdeFunctions.cpp:394:86: warning: unused variable 'xyterm' [-Wunused-variable]
    double distMaxXY0, distMaxXY1, haloMinX, haloMaxX, haloMinY, haloMaxY, xyDistSq, xyterm, bhattaFact;
                                                                                     ^
mkdeFunctions.cpp:394:76: warning: unused variable 'xyDistSq' [-Wunused-variable]
    double distMaxXY0, distMaxXY1, haloMinX, haloMaxX, haloMinY, haloMaxY, xyDistSq, xyterm, bhattaFact;
                                                                           ^
mkdeFunctions.cpp:392:12: warning: variable 'totalT' set but not used [-Wunused-but-set-variable]
    double totalT; // T, Ttotal
           ^
mkdeFunctions.cpp:643:33: warning: unused variable 'th_id' [-Wunused-variable]
                            int th_id = omp_get_thread_num();
                                ^
mkdeFunctions.cpp:631:32: warning: unused variable 'voxy' [-Wunused-variable]
                        double voxy = yGrid[i2]; // voxel y
                               ^
mkdeFunctions.cpp:572:24: warning: unused variable 'factor' [-Wunused-variable]
    double eX, eY, eZ, factor;
                       ^
mkdeFunctions.cpp:575:52: warning: unused variable 'tmpZ' [-Wunused-variable]
    double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm;
                                                   ^
mkdeFunctions.cpp:579:67: warning: unused variable 'i3max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                                                                  ^
mkdeFunctions.cpp:575:58: warning: unused variable 'xyterm' [-Wunused-variable]
    double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm;
                                                         ^
mkdeFunctions.cpp:579:44: warning: unused variable 'i2max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                                           ^
mkdeFunctions.cpp:579:55: warning: unused variable 'i3min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                                                      ^
mkdeFunctions.cpp:575:33: warning: unused variable 'xyDistSq' [-Wunused-variable]
    double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm;
                                ^
mkdeFunctions.cpp:575:43: warning: unused variable 'zDistSq' [-Wunused-variable]
    double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm;
                                          ^
mkdeFunctions.cpp:579:9: warning: unused variable 'i1min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
        ^
mkdeFunctions.cpp:574:27: warning: unused variable 'sig2xy_inv' [-Wunused-variable]
    double sig2xy, sig2z, sig2xy_inv, sig2z_inv;
                          ^
mkdeFunctions.cpp:579:21: warning: unused variable 'i1max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                    ^
mkdeFunctions.cpp:574:39: warning: unused variable 'sig2z_inv' [-Wunused-variable]
    double sig2xy, sig2z, sig2xy_inv, sig2z_inv;
                                      ^
mkdeFunctions.cpp:579:32: warning: unused variable 'i2min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                               ^
mkdeFunctions.cpp:869:32: warning: unused variable 'voxy' [-Wunused-variable]
                        double voxy = yGrid[i2]; // voxel y
                               ^
mkdeFunctions.cpp:784:32: warning: unused variable 'i2min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                               ^
mkdeFunctions.cpp:784:21: warning: unused variable 'i1max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                    ^
mkdeFunctions.cpp:784:9: warning: unused variable 'i1min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
        ^
mkdeFunctions.cpp:778:58: warning: unused variable 'xyDistSq' [-Wunused-variable]
    double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact;
                                                         ^
mkdeFunctions.cpp:778:68: warning: unused variable 'zDistSq' [-Wunused-variable]
    double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact;
                                                                   ^
mkdeFunctions.cpp:784:67: warning: unused variable 'i3max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                                                                  ^
mkdeFunctions.cpp:784:55: warning: unused variable 'i3min' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                                                      ^
mkdeFunctions.cpp:784:44: warning: unused variable 'i2max' [-Wunused-variable]
    int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0;
                                           ^
mkdeFunctions.cpp:778:77: warning: unused variable 'tmpZ' [-Wunused-variable]
    double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact;
                                                                            ^
mkdeFunctions.cpp:778:83: warning: unused variable 'xyterm' [-Wunused-variable]
    double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact;
                                                                                  ^
mkdeFunctions.cpp:780:22: warning: unused variable 'hiReflZ1' [-Wunused-variable]
    double loReflZ1, hiReflZ1;
                     ^
mkdeFunctions.cpp:780:12: warning: unused variable 'loReflZ1' [-Wunused-variable]
    double loReflZ1, hiReflZ1;
           ^
mkdeFunctions.cpp:1296:10: warning: unused variable 'ijk' [-Wunused-variable]
    long ijk = 0;
         ^
mkdeFunctions.cpp:1400:12: warning: unused variable 'ySz' [-Wunused-variable]
    double ySz = yGrid[1] - yGrid[0];
           ^
mkdeFunctions.cpp:1399:12: warning: unused variable 'xSz' [-Wunused-variable]
    double xSz = xGrid[1] - xGrid[0];
           ^
mkdeFunctions.cpp:1398:10: warning: unused variable 'ijk' [-Wunused-variable]
    long ijk = 0;
         ^
mkdeFunctions.cpp:1401:12: warning: unused variable 'densTmp' [-Wunused-variable]
    double densTmp;
           ^
47 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mkde.so init.o mkdeFunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/mkde.Rcheck/00LOCK-mkde/00new/mkde/libs
** generating debug symbols (dSYM)
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mkde)