Install log for 'matchingMarkets'

* installing *source* package ‘matchingMarkets’ ...
** package ‘matchingMarkets’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Options.cc -o Options.o
In file included from Options.cc:24:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c System.cc -o System.o
In file included from System.cc:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c kprmatcher.cc -o kprmatcher.o
In file included from kprmatcher.cc:41:
In file included from ../inst/include/kprmatcher.h:36:
In file included from ../inst/include/damatcher.h:36:
In file included from ../inst/include/problem.h:43:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c params.cc -o params.o
In file included from params.cc:36:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c problem.cc -o problem.o
In file included from problem.cc:36:
In file included from ../inst/include/problem.h:43:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rcp.cc -o rcp.o
In file included from rcp.cc:33:
In file included from ../inst/include/rcp.h:41:
In file included from ../inst/include/problem.h:43:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rpmatcher.cc -o rpmatcher.o
In file included from rpmatcher.cc:46:
In file included from ../inst/include/rpmatcher.h:36:
In file included from ../inst/include/damatcher.h:36:
In file included from ../inst/include/problem.h:43:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c runMatch.cpp -o runMatch.o
In file included from runMatch.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c stabit2Mat0.cpp -o stabit2Mat0.o
In file included from stabit2Mat0.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c stabit2Mat1.cpp -o stabit2Mat1.o
In file included from stabit2Mat1.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c stabit2Sel0.cpp -o stabit2Sel0.o
In file included from stabit2Sel0.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c stabit2Sel1.cpp -o stabit2Sel1.o
In file included from stabit2Sel1.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c stabit2Sel2.cpp -o stabit2Sel2.o
In file included from stabit2Sel2.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c stabitSel2.cpp -o stabitSel2.o
In file included from stabitSel2.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp.h:78:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/sugar/sugar.h:28:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file '<IntTypes.h>'; specified path differs in case from file name on disk [-Wnonportable-include-path]
#include <inttypes.h>                   // needed with g++-4.7 to declare intptr_t
         ^~~~~~~~~~~~
         <IntTypes.h>
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o matchingMarkets.so Options.o RcppExports.o System.o kprmatcher.o params.o problem.o rcp.o rpmatcher.o runMatch.o stabit2Mat0.o stabit2Mat1.o stabit2Sel0.o stabit2Sel1.o stabit2Sel2.o stabitSel2.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/matchingMarkets.Rcheck/00LOCK-matchingMarkets/00new/matchingMarkets/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matchingMarkets)