* installing *source* package ‘lme4’ ...
** this is package ‘lme4’ version ‘1.1-38’
** package ‘lme4’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fPIC -falign-functions=64 -Wall -g -O2 -c external.cpp -o external.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fPIC -falign-functions=64 -Wall -g -O2 -c glmFamily.cpp -o glmFamily.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fPIC -falign-functions=64 -Wall -g -O2 -c optimizer.cpp -o optimizer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fPIC -falign-functions=64 -Wall -g -O2 -c predModule.cpp -o predModule.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fPIC -falign-functions=64 -Wall -g -O2 -c respModule.cpp -o respModule.o
In file included from respModule.cpp:7:
In file included from ./respModule.h:In file included from glmFamily.cpp:8:
In file included from ./glmFamily.h:11:
In file included from optimizer.cpp:13:
In file included from ./optimizer.hIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h12:In file included from :12predModule.cpp:8:
:
In file included from :
In file included from external.cppIn file included from ./predModule.h:8:
25/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
:In file included from ./predModule.h:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from :
12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from :25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse61:
./glmFamily.h:26:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCoreIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:::
61:In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
1161In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
::
:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h273In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h::/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h13/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:27329:::
In file included from 273:273:13: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
::: Index count = 0; warning: 13warning: variable 'count' set but not used [-Wunused-but-set-variable]variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
Index count = 0;
: 26 ^warning: ^ ^
variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from In file included from predModule.cpp:8glmFamily.cpp:
In file included from ./predModule.hIn file included from ::8external.cpp:
In file included from :8optimizer.cpp:
In file included from :13:
In file included from ./optimizer.h:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h./predModule.h12In file included from respModule.cpp:7::
:
29In file included from :
:In file included from ./respModule.h:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h12:
:In file included from In file included from ./glmFamily.h25In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse::
./glmFamily.h::11:In file included from 11:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h2925:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:
In file included from :29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from :29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78::In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:2535In file included from ::
25/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:
:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h::78In file included from 935:9: :
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from 29:
:In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
warning: Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
warning: ::variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h ^ Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 29
::
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
^
7879/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h ^9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
::
78 Index nsuper_et = 0; // Number of relaxed snodes in the original etree
:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
9: Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^ ^ warning:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
^variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from predModule.cpp:In file included from respModule.cpp:7:
8In file included from glmFamily.cpp:
In file included from In file included from ./respModule.h:12:
:In file included from 8In file included from In file included from external.cpp:8:
In file included from :
optimizer.cpp./predModule.h./predModule.h:12:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h::In file included from ./glmFamily.h:11:
./glmFamily.h31In file included from ::
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from 12/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h11:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:31:
In file included from In file included from :
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:::/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers13:
25/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers::46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:
46:
In file included from 10In file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h./optimizer.h72:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h::12: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72::
:103110: Index replacements = 0;:
In file included from
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers: ^:
warning: In file included from 46/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
variable 'replacements' set but not used [-Wunused-but-set-variable]In file included from warning: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
variable 'replacements' set but not used [-Wunused-but-set-variable]
:
Index replacements = 0;/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: Index replacements = 0;
^
^
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
Index replacements = 0;
^
In file included from optimizer.cpp:13:
In file included from ./optimizer.h:12In file included from external.cpp:8:
In file included from ./predModule.h:12:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.hIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from :37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:77: warning: variable 'count' set but not used [-Wunused-but-set-variable]
: int count = 0;
^
warning: In file included from glmFamily.cpp:8:
In file included from ./glmFamily.h:11:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:variable 'count' set but not used [-Wunused-but-set-variable]37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: In file included from
predModule.cpp:8:
In file included from ./predModule.h:12:
In file included from variable 'count' set but not used [-Wunused-but-set-variable]In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
int count = 0;respModule.cppIn file included from
^
int count = 0;
^/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from :7:
In file included from ./respModule.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h::12:
In file included from ./glmFamily.h:11246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from
int count = 0;
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: ^
warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
5 warnings generated.
5 warnings generated.
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o lme4.so external.o glmFamily.o optimizer.o predModule.o respModule.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/lme4.Rcheck/00LOCK-lme4/00new/lme4/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lme4)