- using R version 4.5.0 beta (2025-03-29 r88069)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘lgcp/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘lgcp’ version ‘2.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘lgcp’ can be installed ... [36s/111s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [5s/10s] OK
- checking whether the package can be loaded with stated dependencies ... [5s/12s] OK
- checking whether the package can be unloaded cleanly ... [5s/8s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s/9s] OK
- checking whether the namespace can be unloaded cleanly ... [5s/11s] OK
- checking loading without being on the library search path ... [5s/9s] OK
- checking whether startup messages can be suppressed ... [5s/10s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [30s/48s] OK
- checking Rd files ... [1s/2s] NOTE
checkRd: (-1) GaussianPrior.Rd:24: Lost braces
24 | \link{LogGaussianPrior}, link{PriorSpec.list}
| ^
checkRd: (-1) LogGaussianPrior.Rd:24: Lost braces
24 | \link{GaussianPrior}, link{PriorSpec.list}
| ^
checkRd: (-1) initialiseAMCMC.Rd:20: Lost braces
20 | lgcp vignette, code{vignette("lgcp")}, for further details on writing adaptive MCMC schemes.
| ^
checkRd: (-1) lgcpPredictAggregateSpatialPlusPars.Rd:120: Lost braces
120 | link{chooseCellWidth}, \link{getpolyol}, \link{guessinterp}, \link{getZmat},
| ^
checkRd: (-1) lgcpPredictMultitypeSpatialPlusPars.Rd:112: Lost braces
112 | link{chooseCellWidth}, \link{getpolyol}, \link{guessinterp}, \link{getZmat},
| ^
checkRd: (-1) lgcpPredictSpatialPlusPars.Rd:107: Lost braces
107 | link{chooseCellWidth}, \link{getpolyol}, \link{guessinterp}, \link{getZmat},
| ^
checkRd: (-1) lgcpPredictSpatioTemporalPlusPars.Rd:128: Lost braces
128 | link{chooseCellWidth}, \link{getpolyol}, \link{guessinterp}, \link{getZmat},
| ^
checkRd: (-1) spatialAtRisk.Rd:61: Lost braces
61 | \link{selectObsWindow} \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}, \link{spatialAtRisk.bivden}
| ^
checkRd: (-1) spatialAtRisk.SpatialGridDataFrame.Rd:25: Lost braces
25 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialPolygonsDataFrame}, \link{spatialAtRisk.bivden}
| ^
checkRd: (-1) spatialAtRisk.SpatialPolygonsDataFrame.Rd:25: Lost braces
25 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.bivden}
| ^
checkRd: (-1) spatialAtRisk.bivden.Rd:25: Lost braces
25 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}
| ^
checkRd: (-1) spatialAtRisk.default.Rd:26: Lost braces
26 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}, \link{spatialAtRisk.bivden}, \code{xvals}, \code{yvals}, \code{zvals}
| ^
checkRd: (-1) spatialAtRisk.fromXYZ.Rd:30: Lost braces
30 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}, \link{spatialAtRisk.bivden}
| ^
checkRd: (-1) spatialAtRisk.function.Rd:30: Lost braces
30 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}, \link{spatialAtRisk.bivden}
| ^
checkRd: (-1) spatialAtRisk.im.Rd:25: Lost braces
25 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}, \link{spatialAtRisk.bivden}
| ^
checkRd: (-1) spatialAtRisk.lgcpgrid.Rd:27: Lost braces
27 | \link{lgcpPredict}, link{lgcpSim}, \link{spatialAtRisk.default}, \link{spatialAtRisk.fromXYZ}, \link{spatialAtRisk.im}, \link{spatialAtRisk.function}, \link{spatialAtRisk.SpatialGridDataFrame}, \link{spatialAtRisk.SpatialPolygonsDataFrame}
| ^
checkRd: (-1) updateAMCMC.Rd:20: Lost braces
20 | lgcp vignette, code{vignette("lgcp")}, for further details on writing adaptive MCMC schemes.
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/6s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [46s/66s] OK
Running ‘adaptiveSchemesTest.R’ [4s/5s]
Running ‘fromSPDFTest.R’ [4s/6s]
Running ‘gridAverageTest.R’ [4s/6s]
Running ‘gridSummaryTest.R’ [5s/6s]
Running ‘iteratorTest.R’ [5s/6s]
Running ‘lgcpMethodsTest.R’ [15s/27s]
Running ‘mstpppClassTest.R’ [4s/6s]
Running ‘stpppClassTest.R’ [4s/5s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [7s/8s] OK
- checking PDF version of manual ... [10s/12s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '