* installing *source* package ‘lefko3’ ...
** this is package ‘lefko3’ version ‘6.7.1’
** package ‘lefko3’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c DataManagement.cpp -o DataManagement.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c ErrorChecks.cpp -o ErrorChecks.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c ExtraFunctions.cpp -o ExtraFunctions.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c Mats2.cpp -o Mats2.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c MatsNProj.cpp -o MatsNProj.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c ModelSelection.cpp -o ModelSelection.o
In file included from Mats2.cpp:3:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
bool esta2_used {false};
^
In file included from DataManagement.cpp:5:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
bool esta2_used {false};
^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
int age_related_stages {0};
^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
int age_related_min_ages {0};
^
In file included from MatsNProj.cpp:7:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
bool esta2_used {false};
^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
int age_related_stages {0};
^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
int age_related_min_ages {0};
^
In file included from ModelSelection.cpp:2:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
bool esta2_used {false};
^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
int age_related_stages {0};
^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
int age_related_min_ages {0};
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c PopChar.cpp -o PopChar.o
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
int age_related_stages {0};
^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
int age_related_min_ages {0};
^
In file included from PopChar.cpp:3:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
bool esta2_used {false};
^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
int age_related_stages {0};
^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
int age_related_min_ages {0};
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c PopDyn2.cpp -o PopDyn2.o
In file included from PopDyn2.cpp:3:
In file included from ../inst/include/LefkoUtils.h:8:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable 'esta2_used' set but not used [-Wunused-but-set-variable]
bool esta2_used {false};
^
../inst/include/basic_funcs/mat_stuff.h:1478:9: warning: variable 'age_related_stages' set but not used [-Wunused-but-set-variable]
int age_related_stages {0};
^
../inst/include/basic_funcs/mat_stuff.h:1479:9: warning: variable 'age_related_min_ages' set but not used [-Wunused-but-set-variable]
int age_related_min_ages {0};
^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_USE_CURRENT -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I/opt/R/arm64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o lefko3.so DataManagement.o ErrorChecks.o ExtraFunctions.o Mats2.o MatsNProj.o ModelSelection.o PopChar.o PopDyn2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
ld: warning: could not create compact unwind for ___emutls_get_address: does not use standard frame
ld: warning: could not create compact unwind for _allocate_tramp_ctrl: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_created: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/lefko3.Rcheck/00LOCK-lefko3/00new/lefko3/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lefko3)