* installing *source* package ‘jmotif’ ...
** this is package ‘jmotif’ version ‘1.3.0’
** package ‘jmotif’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c discord.cpp -o discord.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c distance.cpp -o distance.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hot-sax.cpp -o hot-sax.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c jmotif.cpp -o jmotif.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c paa.cpp -o paa.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair.cpp -o repair.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_digram.cpp -o repair_digram.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_guard.cpp -o repair_guard.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_priority_queue.cpp -o repair_priority_queue.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_rule.cpp -o repair_rule.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_symbol.cpp -o repair_symbol.o
repair.cpp:119:7: warning: variable 'i' set but not used [-Wunused-but-set-variable]
119 | int i=0;
| ^
In file included from repair.cpp:1:
In file included from ../inst/include/jmotif.h:5:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:304:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__algorithm/copy.h:12:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__algorithm/copy_move_common.h:18:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__string/constexpr_c_functions.h:14:
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/construct_at.h:69:5: warning: destructor called on non-final 'repair_symbol' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
69 | __loc->~_Tp();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/construct_at.h:104:10: note: in instantiation of function template specialization 'std::__destroy_at<repair_symbol, 0>' requested here
104 | std::__destroy_at(__loc);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator_traits.h:323:16: note: in instantiation of function template specialization 'std::destroy_at<repair_symbol, 0>' requested here
323 | _VSTD::destroy_at(__p);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/deque:2865:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<repair_symbol>>::destroy<repair_symbol, void, void>' requested here
2865 | __alloc_traits::destroy(__a, _VSTD::addressof(*__i));
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/deque:589:7: note: in instantiation of member function 'std::deque<repair_symbol>::clear' requested here
589 | clear();
| ^
../inst/include/jmotif.h:216:7: note: in instantiation of member function 'std::deque<repair_symbol>::~deque' requested here
216 | class repair_pool {
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/construct_at.h:69:13: note: qualify call to silence this warning
69 | __loc->~_Tp();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/construct_at.h:69:5: warning: destructor called on non-final 'repair_guard' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
69 | __loc->~_Tp();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/construct_at.h:104:10: note: in instantiation of function template specialization 'std::__destroy_at<repair_guard, 0>' requested here
104 | std::__destroy_at(__loc);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator_traits.h:323:16: note: in instantiation of function template specialization 'std::destroy_at<repair_guard, 0>' requested here
323 | _VSTD::destroy_at(__p);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/deque:2865:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<repair_guard>>::destroy<repair_guard, void, void>' requested here
2865 | __alloc_traits::destroy(__a, _VSTD::addressof(*__i));
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/deque:589:7: note: in instantiation of member function 'std::deque<repair_guard>::clear' requested here
589 | clear();
| ^
../inst/include/jmotif.h:216:7: note: in instantiation of member function 'std::deque<repair_guard>::~deque' requested here
216 | class repair_pool {
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/construct_at.h:69:13: note: qualify call to silence this warning
69 | __loc->~_Tp();
| ^
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_symbol_record.cpp -o repair_symbol_record.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rra.cpp -o rra.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sax-vsm.cpp -o sax-vsm.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sax.cpp -o sax.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c string.cpp -o string.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils.cpp -o utils.o
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c visit_registry.cpp -o visit_registry.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c znorm.cpp -o znorm.o
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o jmotif.so RcppExports.o discord.o distance.o hot-sax.o jmotif.o paa.o repair.o repair_digram.o repair_guard.o repair_priority_queue.o repair_rule.o repair_symbol.o repair_symbol_record.o rra.o sax-vsm.o sax.o string.o utils.o visit_registry.o znorm.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/jmotif.Rcheck/00LOCK-jmotif/00new/jmotif/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jmotif)