• using R version 4.5.2 Patched (2026-01-31 r89382)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 16.0.0 (clang-1600.0.26.6)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.7.8
• using session charset: UTF-8
• checking for file ‘haplo.stats/DESCRIPTION’ ... OK
• this is package ‘haplo.stats’ version ‘1.9.8.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘haplo.stats’ can be installed ... [5s/7s] OK See the install log for details.
• used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
• used SDK: ‘MacOSX11.3.1.sdk’
• checking installed package size ... OK
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• checking DESCRIPTION meta-information ... OK
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• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
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• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
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• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/4s] OK
• checking Rd files ... [0s/0s] OK
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• checking for missing documentation entries ... OK
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• checking contents of ‘data’ directory ... OK
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• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/11s] OK   Running ‘testthat.R’ [11s/11s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [31s/31s] ERROR Error(s) in re-building vignettes: --- re-building ‘haplostats.Rmd’ using rmarkdown 2026-02-24 07:31:48.354 R[4512:751135] XType: Using static font registry. Quitting from haplostats.Rmd:1216-1224 [anovaGLM] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `anova.haplo.glmlist()`: ! models were not all fitted to the same size of dataset --- Backtrace:     ▆  1. └─haplo.stats::anova.haplo.glm(glmfit.gaus, fit.gaus)  2. └─haplo.stats:::anova.haplo.glmlist(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'haplostats.Rmd' failed with diagnostics: models were not all fitted to the same size of dataset --- failed re-building ‘haplostats.Rmd’ SUMMARY: processing the following file failed:   ‘haplostats.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [3s/3s] OK
• DONE Status: 1 ERROR
• using check arguments '--no-clean-on-error '