* installing *source* package ‘gllvm’ ...
** this is package ‘gllvm’ version ‘2.0.10’
** package ‘gllvm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gllvm.cpp -o gllvm.o
In file included from gllvm.cpp:1:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from gllvm.cpp:1:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from gllvm.cpp:4:
./init.h:32:9: warning: unused variable 't' [-Wunused-variable]
32 | int t = INTEGER(tSEXP)[0];
| ^
gllvm.cpp:3912:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
3912 | if((y(i,j)==0)){
| ~~~~~~^~~
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:2035:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ^
gllvm.cpp:3912:25: note: remove extraneous parentheses around the comparison to silence this warning
3912 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:3912:25: note: use '=' to turn this equality comparison into an assignment
3912 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:3918:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
3918 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:3918:32: note: remove extraneous parentheses around the comparison to silence this warning
3918 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:3918:32: note: use '=' to turn this equality comparison into an assignment
3918 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:3980:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
3980 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:3980:25: note: remove extraneous parentheses around the comparison to silence this warning
3980 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:3980:25: note: use '=' to turn this equality comparison into an assignment
3980 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:3983:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
3983 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:3983:32: note: remove extraneous parentheses around the comparison to silence this warning
3983 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:3983:32: note: use '=' to turn this equality comparison into an assignment
3983 | } else if((y(i,j)==1)){
| ^~
| =
gllvm.cpp:4050:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4050 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:4050:25: note: remove extraneous parentheses around the comparison to silence this warning
4050 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:4050:25: note: use '=' to turn this equality comparison into an assignment
4050 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:4054:32: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
4054 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:4054:32: note: remove extraneous parentheses around the comparison to silence this warning
4054 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:4054:32: note: use '=' to turn this equality comparison into an assignment
4054 | } else if((y(i,j)==1)){
| ^~
| =
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o gllvm.so gllvm.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/gllvm.Rcheck/00LOCK-gllvm/00new/gllvm/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gllvm)