* installing *source* package ‘geokmeans’ ...
** this is package ‘geokmeans’ version ‘0.1.0’
** package ‘geokmeans’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++17
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DGEOKM_R_BUILD -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DGEOKM_R_BUILD -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c kmeans_rcpp.cpp -o kmeans_rcpp.o
In file included from kmeans_rcpp.cpp:15:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.hIn file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273: 273 | Inde13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
x count = 0;
273 | | ^
Index count = 0;
| ^
In file included from kmeans_rcpp.cpp:15:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLUIn file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: :25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse: 78 | 29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
Index nsuper_et_pos/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
t 78 | Index nsuper_et_post = 0 = 0; //; // Number o Number of rf relaxed snodes in elaxedpo snodstordered etreees in posto
| ^
r/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9dere: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | d etree
| ^
Index nsuper_e/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsut = per_et = 0; // Number0; // Numbe of relaxed r of relaxed ssnodes in thnodes ie original etree
n the origin| ^
al etree
| ^
In file included from kmeans_rcpp.cpp:15:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from In file included from RcppExports.cpp/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from 46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: :10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index repl 72 | Index replaceacements =ments = 0;
| ^
0;
| ^
In file included from kmeans_rcpp.cpp:15In file included from RcppExports.cpp:4:
In file included from :
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:25:
In file included from :7: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
246 | i | ^
nt count = 0;
| ^
In file included from kmeans_rcpp.cpp:44:
In file included from ./IOutils.h:9:
./misc_utils.h:143:5: warning: unused variable 'limit' [-Wunused-variable]
143 | int limit = 0;
| ^~~~~
In file included from kmeans_rcpp.cpp:45:
./algo_utils.h:231:16: warning: unused variable 'j' [-Wunused-variable]
231 | int i = 0, j = 0, size = dataset.size();
| ^
./algo_utils.h:706:43: warning: unused variable 'acc1' [-Wunused-variable]
706 | float temp = 0, temp1 = 0, temp2 = 0, acc1 = 0, acc2 = 0;
| ^~~~
./algo_utils.h:706:53: warning: unused variable 'acc2' [-Wunused-variable]
706 | float temp = 0, temp1 = 0, temp2 = 0, acc1 = 0, acc2 = 0;
| ^~~~
In file included from kmeans_rcpp.cpp:47:
./lloyd_kmeans.h:36:17: warning: unused variable 'pu' [-Wunused-variable]
36 | print_utils pu;
| ^~
./lloyd_kmeans.h:44:9: warning: unused variable 'tt' [-Wunused-variable]
44 | int tt = 1;
| ^~
In file included from kmeans_rcpp.cpp:48:
In file included from ./geokmeans.h:9:
./geokm_utils.h:191:11: warning: unused variable 'shortestDist2' [-Wunused-variable]
191 | float shortestDist2 = 0;
| ^~~~~~~~~~~~~
./geokm_utils.h:271:11: warning: unused variable 'shortestDist2' [-Wunused-variable]
271 | float shortestDist2 = 0;
| ^~~~~~~~~~~~~
./geokm_utils.h:360:50: warning: unused variable 'closest_neighbor' [-Wunused-variable]
360 | int curr_center = 0, ot_center = 0, cnt = 0, closest_neighbor = 0, temp_val = 0, closest_ind = 0;
| ^~~~~~~~~~~~~~~~
./geokm_utils.h:360:72: warning: unused variable 'temp_val' [-Wunused-variable]
360 | int curr_center = 0, ot_center = 0, cnt = 0, closest_neighbor = 0, temp_val = 0, closest_ind = 0;
| ^~~~~~~~
./geokm_utils.h:360:86: warning: unused variable 'closest_ind' [-Wunused-variable]
360 | int curr_center = 0, ot_center = 0, cnt = 0, closest_neighbor = 0, temp_val = 0, closest_ind = 0;
| ^~~~~~~~~~~
./geokm_utils.h:361:11: warning: unused variable 'shortestDist2' [-Wunused-variable]
361 | float shortestDist2 = 0;
| ^~~~~~~~~~~~~
./geokm_utils.h:441:41: warning: unused variable 'cnt' [-Wunused-variable]
441 | int curr_center = 0, ot_center = 0, cnt = 0;
| ^~~
In file included from kmeans_rcpp.cpp:49:
./elkan.h:61:9: warning: unused variable 'tt' [-Wunused-variable]
61 | int tt = 1;
| ^~
./elkan.h:67:16: warning: unused variable 'dc_utils' [-Wunused-variable]
67 | dckm_utils dc_utils;
| ^~~~~~~~
In file included from kmeans_rcpp.cpp:50:
./hamerly.h:42:9: warning: unused variable 'tt' [-Wunused-variable]
42 | int tt = 12;
| ^~
./hamerly.h:48:16: warning: unused variable 'dc_utils' [-Wunused-variable]
48 | dckm_utils dc_utils;
| ^~~~~~~~
In file included from kmeans_rcpp.cpp:51:
./annulus.h:97:9: warning: unused variable 'v' [-Wunused-variable]
97 | int v = 0;
| ^
In file included from kmeans_rcpp.cpp:52:
./exponion.h:72:19: warning: unused variable 'ann' [-Wunused-variable]
72 | annulus_utils ann;
| ^~~
./exponion.h:87:9: warning: unused variable 'tt' [-Wunused-variable]
87 | int tt = 1;
| ^~
./exponion.h:88:9: warning: unused variable 'my_point' [-Wunused-variable]
88 | int my_point = 424;
| ^~~~~~~~
In file included from kmeans_rcpp.cpp:53:
./ball_kmeans_xf.h:31:1: warning: typedef requires a name [-Wmissing-declarations]
31 | typedef struct Neighbor
| ^~~~~~~~~~~~~~~~~~~~~~~
./ball_kmeans_xf.h:434:21: warning: unused variable 'lenth' [-Wunused-variable]
434 | int lenth = old_now_index.size();
| ^~~~~
./ball_kmeans_xf.h:553:18: warning: variable 'now_centers_rows' set but not used [-Wunused-but-set-variable]
553 | unsigned int now_centers_rows;
| ^
./ball_kmeans_xf.h:570:10: warning: unused variable 'start' [-Wunused-variable]
570 | auto start = std::chrono::high_resolution_clock::now();
| ^~~~~
5 warnings generated.
In file included from kmeans_rcpp.cpp:49:
./elkan.h:56:40: warning: unused variable 'k' [-Wunused-variable]
56 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
kmeans_rcpp.cpp:145:19: note: in instantiation of function template specialization 'elkan_kmeans<float, int>' requested here
145 | output_data r = elkan_kmeans(X, num_clusters, static_cast<float>(threshold),
| ^
In file included from kmeans_rcpp.cpp:49:
./elkan.h:56:47: warning: unused variable 'l' [-Wunused-variable]
56 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./elkan.h:56:54: warning: unused variable 'm' [-Wunused-variable]
56 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./elkan.h:57:37: warning: unused variable 'vec_sum' [-Wunused-variable]
57 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0;
| ^~~~~~~
In file included from kmeans_rcpp.cpp:50:
./hamerly.h:38:40: warning: unused variable 'k' [-Wunused-variable]
38 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
kmeans_rcpp.cpp:156:19: note: in instantiation of function template specialization 'hamerly_kmeans<float, int>' requested here
156 | output_data r = hamerly_kmeans(X, num_clusters, static_cast<float>(threshold),
| ^
In file included from kmeans_rcpp.cpp:50:
./hamerly.h:38:47: warning: unused variable 'l' [-Wunused-variable]
38 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./hamerly.h:38:54: warning: unused variable 'm' [-Wunused-variable]
38 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./hamerly.h:39:37: warning: unused variable 'vec_sum' [-Wunused-variable]
39 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max123 = 0, dist =0;
| ^~~~~~~
In file included from kmeans_rcpp.cpp:51:
./annulus.h:88:24: warning: unused variable 'k' [-Wunused-variable]
88 | Tint i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
kmeans_rcpp.cpp:167:19: note: in instantiation of function template specialization 'annulus<float, int>' requested here
167 | output_data r = annulus(X, num_clusters, static_cast<float>(threshold),
| ^
In file included from kmeans_rcpp.cpp:51:
./annulus.h:88:31: warning: unused variable 'l' [-Wunused-variable]
88 | Tint i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./annulus.h:88:38: warning: unused variable 'm' [-Wunused-variable]
88 | Tint i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./annulus.h:89:37: warning: unused variable 'vec_sum' [-Wunused-variable]
89 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0;
| ^~~~~~~
./annulus.h:89:50: warning: unused variable 'max' [-Wunused-variable]
89 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0;
| ^~~
In file included from kmeans_rcpp.cpp:52:
./exponion.h:68:24: warning: unused variable 'k' [-Wunused-variable]
68 | Tint i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
kmeans_rcpp.cpp:178:19: note: in instantiation of function template specialization 'exponion<float, int>' requested here
178 | output_data r = exponion(X, num_clusters, static_cast<float>(threshold),
| ^
In file included from kmeans_rcpp.cpp:52:
./exponion.h:68:31: warning: unused variable 'l' [-Wunused-variable]
68 | Tint i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./exponion.h:68:38: warning: unused variable 'm' [-Wunused-variable]
68 | Tint i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./exponion.h:69:37: warning: unused variable 'vec_sum' [-Wunused-variable]
69 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0;
| ^~~~~~~
./exponion.h:69:50: warning: unused variable 'max' [-Wunused-variable]
69 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0;
| ^~~
In file included from kmeans_rcpp.cpp:48:
In file included from ./geokmeans.h:9:
./geokm_utils.h:437:8: warning: unused variable 'radius' [-Wunused-variable]
437 | TD radius = 0;
| ^~~~~~
./exponion.h:101:9: note: in instantiation of function template specialization 'find_exp_neighbors<float, int>' requested here
101 | find_exp_neighbors(centroids, center_dist_mat, closest_center_dist, center_center_dist, dist_counter);
| ^
kmeans_rcpp.cpp:178:19: note: in instantiation of function template specialization 'exponion<float, int>' requested here
178 | output_data r = exponion(X, num_clusters, static_cast<float>(threshold),
| ^
In file included from kmeans_rcpp.cpp:48:
./geokmeans.h:58:10: warning: unused variable 'my_cluster' [-Wunused-variable]
58 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^~~~~~~~~~
kmeans_rcpp.cpp:189:19: note: in instantiation of function template specialization 'geokmeans<float, int>' requested here
189 | output_data r = geokmeans(X, num_clusters, static_cast<float>(threshold),
| ^
In file included from kmeans_rcpp.cpp:48:
./geokmeans.h:58:40: warning: unused variable 'k' [-Wunused-variable]
58 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./geokmeans.h:58:47: warning: unused variable 'l' [-Wunused-variable]
58 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./geokmeans.h:58:54: warning: unused variable 'm' [-Wunused-variable]
58 | Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0;
| ^
./geokmeans.h:59:37: warning: unused variable 'vec_sum' [-Wunused-variable]
59 | Tfloat temp_diff = 0, diff = 0, vec_sum = 0;
| ^~~~~~~
54 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o geokmeans.so RcppExports.o kmeans_rcpp.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/geokmeans.Rcheck/00LOCK-geokmeans/00new/geokmeans/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geokmeans)