* installing *source* package ‘fb4package’ ... ** this is package ‘fb4package’ version ‘2.1.0’ ** package ‘fb4package’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using SDK: ‘MacOSX14.5.sdk’ clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./includes -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fb4_main.cpp -o fb4_main.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./includes -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o In file included from fb4_main.cpp:1: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fb4_main.cpp:1: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ fb4_main.cpp:102:17: warning: unused variable 'water_fraction' [-Wunused-variable] 102 | DATA_SCALAR(water_fraction); | ^~~~~~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:2035:34: note: in instantiation of member function 'objective_function::operator()' requested here 2035 | PROTECT( res = asSEXP( pf->operator()() ) ); | ^ fb4_main.cpp:103:17: warning: unused variable 'fat_energy' [-Wunused-variable] 103 | DATA_SCALAR(fat_energy); | ^~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ fb4_main.cpp:104:17: warning: unused variable 'protein_energy' [-Wunused-variable] 104 | DATA_SCALAR(protein_energy); | ^~~~~~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ fb4_main.cpp:105:17: warning: unused variable 'max_fat_fraction' [-Wunused-variable] 105 | DATA_SCALAR(max_fat_fraction); | ^~~~~~~~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ fb4_main.cpp:439:17: warning: unused variable 'water_fraction' [-Wunused-variable] 439 | DATA_SCALAR(water_fraction); | ^~~~~~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ fb4_main.cpp:440:17: warning: unused variable 'fat_energy' [-Wunused-variable] 440 | DATA_SCALAR(fat_energy); | ^~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ fb4_main.cpp:441:17: warning: unused variable 'protein_energy' [-Wunused-variable] 441 | DATA_SCALAR(protein_energy); | ^~~~~~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ fb4_main.cpp:442:17: warning: unused variable 'max_fat_fraction' [-Wunused-variable] 442 | DATA_SCALAR(max_fat_fraction); | ^~~~~~~~~~~~~~~~ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/tmb_core.hpp:255:6: note: expanded from macro 'DATA_SCALAR' 255 | Type name(asVector(getListElement(TMB_OBJECTIVE_PTR -> data, \ | ^~~~ 11 warnings generated. clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o fb4package.so fb4_main.o init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/fb4package.Rcheck/00LOCK-fb4package/00new/fb4package/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fb4package)