* installing *source* package ‘fasttreeid’ ... ** this is package ‘fasttreeid’ version ‘1.0.0’ ** package ‘fasttreeid’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c algebra.cpp -o algebra.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c identification.cpp -o identification.o In file included from identification.cpp:1: In file included from ./identification.h:3: In file included from ./algebra.h:3: In file included from ./random.h:3: In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/optional:152: In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/functional:504: /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'fasttreeid::Lambda' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] __data_.second().~_Tp(); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3296:9: note: in instantiation of member function 'std::__shared_ptr_emplace>::__on_zero_shared' requested here __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace &, const unsigned long &, unsigned long &>' requested here ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); ^ identification.cpp:542:37: note: in instantiation of function template specialization 'std::make_shared &, const unsigned long &, unsigned long &>' requested here lambda[directed[i - 1]][i] = std::make_shared(randomTool, directed[i - 1], i); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning __data_.second().~_Tp(); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'fasttreeid::Omega' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] __data_.second().~_Tp(); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3296:9: note: in instantiation of member function 'std::__shared_ptr_emplace>::__on_zero_shared' requested here __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace &, unsigned long &, unsigned long &>' requested here ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); ^ identification.cpp:545:22: note: in instantiation of function template specialization 'std::make_shared &, unsigned long &, unsigned long &>' requested here omega[u][v] = std::make_shared(randomTool, u, v); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning __data_.second().~_Tp(); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'fasttreeid::Sigma' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] __data_.second().~_Tp(); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3296:9: note: in instantiation of member function 'std::__shared_ptr_emplace>::__on_zero_shared' requested here __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace' requested here ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); ^ identification.cpp:553:23: note: in instantiation of function template specialization 'std::make_shared' requested here sigma[i][j] = std::make_shared(i, j); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning __data_.second().~_Tp(); ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c random.cpp -o random.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rbridge.cpp -o rbridge.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o fasttreeid.so RcppExports.o algebra.o identification.o random.o rbridge.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/fasttreeid.Rcheck/00LOCK-fasttreeid/00new/fasttreeid/libs ** generating debug symbols (dSYM) ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fasttreeid)