* installing *source* package ‘dgraphs’ ... ** this is package ‘dgraphs’ version ‘0.1.0’ ** package ‘dgraphs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++17 using SDK: ‘MacOSX14.5.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SEXP_cpp_conversion_utils.cpp -o SEXP_cpp_conversion_utils.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Eigen_utils.cpp -o Eigen_utils.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adaptive_radius_graph_ann.cpp -o adaptive_radius_graph_ann.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bidirectional_dijkstra.cpp -o bidirectional_dijkstra.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cpp_mstrees.cpp -o cpp_mstrees.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dgraphs_init.cpp -o dgraphs_init.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c geometric_edge_pruning.cpp -o geometric_edge_pruning.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c geodesic_iknn_graphs.cpp -o geodesic_iknn_graphs.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c geodesic_stats.cpp -o geodesic_stats.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c geodesic_stats_r.cpp -o geodesic_stats_r.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_core_endpoints.cpp -o graph_core_endpoints.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_endpoint_geometry_rcpp.cpp -o graph_endpoint_geometry_rcpp.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_endpoint_geometry_rcpp_wrappers.cpp -o graph_endpoint_geometry_rcpp_wrappers.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_spectrum.cpp -o graph_spectrum.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_conn_components.cpp -o graph_conn_components.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_maximal_packing.cpp -o graph_maximal_packing.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_maximal_packing_r.cpp -o graph_maximal_packing_r.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph_utils_native.cpp -o graph_utils_native.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c kNN.cpp -o kNN.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c knn_search_result_native.cpp -o knn_search_result_native.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c local_geodesic_pruning.cpp -o local_geodesic_pruning.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mknn_graphs.cpp -o mknn_graphs.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mst_completion_graphs.cpp -o mst_completion_graphs.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mst_completion_graphs_r.cpp -o mst_completion_graphs_r.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mstree_total_length.cpp -o mstree_total_length.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c path_grid.cpp -o path_grid.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c progress_utils.cpp -o progress_utils.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pruning_long_edges.cpp -o pruning_long_edges.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c prune_long_edges.cpp -o prune_long_edges.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c set_wgraph.cpp -o set_wgraph.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c shortest_path_utils.cpp -o shortest_path_utils.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sknn_graphs.cpp -o sknn_graphs.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c kernels.c -o kernels.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c iknn_graphs.cpp -o iknn_graphs.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c linf_simplex_knn.cpp -o linf_simplex_knn.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mstree.c -o mstree.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/ANN.cpp -o ANN/ANN.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/bd_fix_rad_search.cpp -o ANN/bd_fix_rad_search.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/bd_pr_search.cpp -o ANN/bd_pr_search.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/bd_search.cpp -o ANN/bd_search.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/bd_tree.cpp -o ANN/bd_tree.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_dump.cpp -o ANN/kd_dump.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_fix_rad_search.cpp -o ANN/kd_fix_rad_search.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_pr_search.cpp -o ANN/kd_pr_search.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_search.cpp -o ANN/kd_search.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_split.cpp -o ANN/kd_split.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_tree.cpp -o ANN/kd_tree.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -include ../inst/include/dgraphs/eigen_config.hpp -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ANN/kd_util.cpp -o ANN/kd_util.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o dgraphs.so SEXP_cpp_conversion_utils.o Eigen_utils.o adaptive_radius_graph_ann.o bidirectional_dijkstra.o cpp_mstrees.o dgraphs_init.o geometric_edge_pruning.o geodesic_iknn_graphs.o geodesic_stats.o geodesic_stats_r.o graph_core_endpoints.o graph_endpoint_geometry_rcpp.o graph_endpoint_geometry_rcpp_wrappers.o graph_spectrum.o graph_conn_components.o graph_maximal_packing.o graph_maximal_packing_r.o graph_utils_native.o kNN.o knn_search_result_native.o local_geodesic_pruning.o mknn_graphs.o mst_completion_graphs.o mst_completion_graphs_r.o mstree_total_length.o path_grid.o progress_utils.o pruning_long_edges.o prune_long_edges.o set_wgraph.o shortest_path_utils.o sknn_graphs.o kernels.o iknn_graphs.o linf_simplex_knn.o mstree.o ANN/ANN.o ANN/bd_fix_rad_search.o ANN/bd_pr_search.o ANN/bd_search.o ANN/bd_tree.o ANN/kd_dump.o ANN/kd_fix_rad_search.o ANN/kd_pr_search.o ANN/kd_search.o ANN/kd_split.o ANN/kd_tree.o ANN/kd_util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/dgraphs.Rcheck/00LOCK-dgraphs/00new/dgraphs/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dgraphs)