* installing *source* package ‘bgms’ ... ** this is package ‘bgms’ version ‘0.2.0.0’ ** package ‘bgms’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++20 using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++20 using SDK: ‘MacOSX14.5.sdk’ clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgmCompare_gradient_interface.cpp -o bgmCompare_gradient_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgmCompare_interface.cpp -o bgmCompare_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cholupdate_test_interface.cpp -o cholupdate_test_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c edge_prior_correction_test_interface.cpp -o edge_prior_correction_test_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW 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-I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ggm_gibbs_test_interface.cpp -o ggm_gibbs_test_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ggm_gradient_interface.cpp -o ggm_gradient_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c math/cholupdate.cpp -o math/cholupdate.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c math/custom_explog.cpp -o math/custom_explog.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/algorithms/hamiltonian_utils.cpp -o mcmc/algorithms/hamiltonian_utils.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/algorithms/leapfrog.cpp -o mcmc/algorithms/leapfrog.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW 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-I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mixed_gradient_interface.cpp -o mixed_gradient_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mixed_indicator_test_interface.cpp -o mixed_indicator_test_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/bgmCompare/bgmCompare_helper.cpp -o models/bgmCompare/bgmCompare_helper.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/bgmCompare/bgmCompare_logp_and_grad.cpp -o models/bgmCompare/bgmCompare_logp_and_grad.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/bgmCompare/bgmCompare_sampler.cpp -o models/bgmCompare/bgmCompare_sampler.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/ggm/ggm_gradient.cpp -o models/ggm/ggm_gradient.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/ggm/ggm_model.cpp -o models/ggm/ggm_model.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/ggm/zratio_engine.cpp -o models/ggm/zratio_engine.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/mixed/mixed_mrf_gradient.cpp -o models/mixed/mixed_mrf_gradient.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/mixed/mixed_mrf_likelihoods.cpp -o models/mixed/mixed_mrf_likelihoods.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" 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-I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/mixed/mixed_mrf_model.cpp -o models/mixed/mixed_mrf_model.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/omrf/omrf_model.cpp -o models/omrf/omrf_model.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrf_prediction.cpp -o mrf_prediction.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrf_simulation.cpp -o mrf_simulation.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall 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-I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c priors/sbm_edge_prior.cpp -o priors/sbm_edge_prior.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sample_ggm.cpp -o sample_ggm.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sample_mixed.cpp -o sample_mixed.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sample_omrf.cpp -o sample_omrf.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sbm_correction_test_interface.cpp -o sbm_correction_test_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sbm_edge_prior_interface.cpp -o sbm_edge_prior_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils/progress_manager.cpp -o utils/progress_manager.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils/variable_helpers.cpp -o utils/variable_helpers.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c warmup_schedule_test_interface.cpp -o warmup_schedule_test_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c zratio_interface.cpp -o zratio_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c zratio_test_interface.cpp -o zratio_test_interface.o clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bgms.so RcppExports.o bgmCompare_gradient_interface.o bgmCompare_interface.o cholupdate_test_interface.o edge_prior_correction_test_interface.o explog_interface.o ggm_gibbs_test_interface.o ggm_gradient_interface.o math/cholupdate.o math/custom_explog.o mcmc/algorithms/hamiltonian_utils.o mcmc/algorithms/leapfrog.o mcmc/algorithms/metropolis.o mcmc/algorithms/nuts.o mcmc/execution/chain_runner.o mcmc_diagnostics.o mixed_gradient_interface.o mixed_indicator_test_interface.o models/bgmCompare/bgmCompare_helper.o models/bgmCompare/bgmCompare_logp_and_grad.o models/bgmCompare/bgmCompare_sampler.o models/ggm/ggm_gradient.o models/ggm/ggm_model.o models/ggm/zratio_engine.o models/mixed/mixed_mrf_gradient.o models/mixed/mixed_mrf_likelihoods.o models/mixed/mixed_mrf_metropolis.o models/mixed/mixed_mrf_model.o models/omrf/omrf_model.o mrf_prediction.o mrf_simulation.o omrf_residual_test_interface.o prior_test_interface.o priors/sbm_edge_prior.o sample_ggm.o sample_mixed.o sample_omrf.o sbm_correction_test_interface.o sbm_edge_prior_interface.o utils/progress_manager.o utils/variable_helpers.o warmup_schedule_test_interface.o zratio_interface.o zratio_test_interface.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -L/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -Wl,-rpath,/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/bgms.Rcheck/00LOCK-bgms/00new/bgms/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgms)