• using R version 4.5.0 beta (2025-03-29 r88069)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘bbl/DESCRIPTION’ ... OK
• this is package ‘bbl’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘bbl’ can be installed ... [9s/10s] OK See the install log for details.
• used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking installed package size ... INFO   installed size is 6.3Mb   sub-directories of 1Mb or more:     extdata 2.3Mb     libs 3.5Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [2s/2s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [78s/96s] WARNING Error(s) in re-building vignettes: --- re-building ‘article.Rnw’ using Sweave Setting levels: control = No, case = Yes Loading required package: glmnet Loading required package: Matrix Loaded glmnet 4.1-8 Setting levels: control = No, case = Yes Setting levels: control = No, case = Yes Loading required package: Biostrings Loading required package: BiocGenerics Loading required package: generics Attaching package: 'generics' The following objects are masked from 'package:base':     as.difftime, as.factor, as.ordered, intersect, is.element,     setdiff, setequal, union Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats':     IQR, mad, sd, var, xtabs The following objects are masked from 'package:base':     Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,     append, as.data.frame, basename, cbind, colnames, dirname,     do.call, duplicated, eval, evalq, get, grep, grepl,     is.unsorted, lapply, mapply, match, mget, order, paste,     pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,     sapply, saveRDS, table, tapply, unique, unsplit,     which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following objects are masked from 'package:Matrix':     expand, unname The following object is masked from 'package:utils':     findMatches The following objects are masked from 'package:base':     I, expand.grid, unname Loading required package: IRanges Loading required package: XVector Loading required package: GenomeInfoDb Attaching package: 'Biostrings' The following object is masked from 'package:base':     strsplit Error: processing vignette 'article.Rnw' failed with diagnostics: Running 'texi2dvi' on 'article.tex' failed. LaTeX errors: !pdfTeX error: pdflatex (file bbm10): Font bbm10 at 657 not found  ==> Fatal error occurred, no output PDF file produced! --- failed re-building 'article.Rnw' SUMMARY: processing the following file failed:   'article.Rnw' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/4s] OK
• DONE Status: 1 WARNING
• using check arguments '--no-clean-on-error '