Install log for 'bWGR'

* installing *source* package ‘bWGR’ ...
** this is package ‘bWGR’ version ‘2.2.19’
** package ‘bWGR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Rcpp20260726ai.cpp -o Rcpp20260726ai.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppEigen20230423.cpp -o RcppEigen20230423.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppEigenX20251203.cpp -o RcppEigenX20251203.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RegisteringDynamic.c -o RegisteringDynamic.o
In file included from RcppEigen20230423.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       IndeIn file included from RcppEigenX20251203.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.hxIn file included from  Rcpp20260726ai.cpp:In file included from cRcppExports.cpp29:
:3ount =:In file included from  0;4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:
:2625
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from :
      |             ^
In file included from :
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273  /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
273 |       Index c |      In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
ount = 0;
      |             ^ Index cou
nt = 0;
      |             ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppEigenX20251203.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25In file included from RcppExports.cpp:4:
In file included from In file included from RcppEigen20230423.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h::
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from 25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseIn file included from :29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: Rcpp20260726ai.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9::/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h35:78:9: :
   78 |   Inwarning: d/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.he:78:9:variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] x 
warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
 nsuper_et_post   78 |   In   78 | d ewarning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]x nsuper_et_post = 
    78 |   In=0; / d/ 0; /Ie/nd exx nsupeN nsuper_r_et_post = 0; // Nuummber o beeNumber of refltr_postaxed snode = s in postorder0; // Numbed eter of relaxed s n rerodeeof relaxed ss inlaxed snodes in postordnodes in postordereered et d etrpore 
      |         ^e
storderee 
      |         ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |  d etree 
      |         ^
e/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h ::79I79:n:9: warning: 9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index ne variable 'nsuper_et' set but not used [-Wunused-but-set-variable]dex nsuper_et 
=s
      |         ^
   79u 0; // Number o/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.hpef relaxed r_et = 0; :79:9:// Number warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
sn |     79oodes  Index nsuper  |  f re I_in laxed snodes et = 0; tihe ondex nsuper_et = 0; //r/n ti ginal etree 
/h      N| ue original etree 
      |         ^
        ^
mber o Number of relf reaxlaxed snodes in ted snodeshe orig ininal et the original ree 
      | etr        ^
ee 
      |         ^
In file included from RcppEigenX20251203.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
In file included from Rcpp20260726ai.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:25RcppEigen20230423.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from :
In file included from    :
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:7272 |                         /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.hI:31:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
n:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         In:   72 |                         Index replacementsd31e = 0;
      |                               ^
:
x rIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72epl:dex rea10placcem: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
e   entments =s = 72 |          0;
      |                               ^
0;                I
      |                               ^
ndex replacements = 0;
      |                               ^
In file included from In file included from In file included from Rcpp20260726ai.cppRcppEigen20230423.cppRcppExports.cpp:4:
In file included from ::3/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:
:25:
In file included from 3:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.hRcppEigenX20251203.cpp:3:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from :37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7:  246 |   i :7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   inwarning: nIn file included from tt count = 0;/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]

       |       ^
variable 'count' set but not used [-Wunused-but-set-variable]count = 0;
      |       ^
  246 |   int c
  246 |   int countount =  = 0;
      |       ^
0;
      |       ^
Rcpp20260726ai.cpp:361:7: warning: unused variable 'n' [-Wunused-variable]
  361 |   int n = gen.rows();
      |       ^
5 warnings generated.
RcppEigen20230423.cpp:1457:65: warning: unused variable 'h2' [-Wunused-variable]
 1457 |   double ve = vy*0.5, vb1=(vy*0.5)/(MSx1), vb2=(vy*0.5)/(MSx2), h2=0.5;
      |                                                                 ^~
RcppEigen20230423.cpp:1660:64: warning: unused variable 'h2' [-Wunused-variable]
 1660 |   float ve = vy*0.5, vb1=(vy*0.5)/(MSx1), vb2=(vy*0.5)/(MSx2), h2=0.5;
      |                                                                ^~
RcppEigen20230423.cpp:1722:20: warning: unused variable 'n' [-Wunused-variable]
 1722 |   int maxit = 100, n = X.rows(), p = X.cols(), numit = 0, J;
      |                    ^
RcppEigen20230423.cpp:1912:7: warning: unused variable 'p' [-Wunused-variable]
 1912 |   int p = Zfndr.cols(), nf = Zfndr.rows(), ns = Zsamp.rows();
      |       ^
RcppEigen20230423.cpp:2109:26: warning: unused variable 'n' [-Wunused-variable]
 2109 |   int k = matrix.cols(), n=matrix.rows();
      |                          ^
RcppEigen20230423.cpp:2166:7: warning: unused variable 'k' [-Wunused-variable]
 2166 |   int k = Y.cols(), n = Y.rows(), p = C.cols(); float tmp;
      |       ^
RcppEigen20230423.cpp:2166:21: warning: unused variable 'n' [-Wunused-variable]
 2166 |   int k = Y.cols(), n = Y.rows(), p = C.cols(); float tmp;
      |                     ^
RcppEigen20230423.cpp:2166:35: warning: unused variable 'p' [-Wunused-variable]
 2166 |   int k = Y.cols(), n = Y.rows(), p = C.cols(); float tmp;
      |                                   ^
RcppEigen20230423.cpp:2166:55: warning: unused variable 'tmp' [-Wunused-variable]
 2166 |   int k = Y.cols(), n = Y.rows(), p = C.cols(); float tmp;
      |                                                       ^~~
RcppEigen20230423.cpp:2183:7: warning: unused variable 'k' [-Wunused-variable]
 2183 |   int k = Y.cols(), n = Y.rows(), p = C.cols(); float tmp;
      |       ^
RcppEigen20230423.cpp:2183:55: warning: unused variable 'tmp' [-Wunused-variable]
 2183 |   int k = Y.cols(), n = Y.rows(), p = C.cols(); float tmp;
      |                                                       ^~~
6 warnings generated.
5 warnings generated.
16 warnings generated.
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bWGR.so Rcpp20260726ai.o RcppEigen20230423.o RcppEigenX20251203.o RcppExports.o RegisteringDynamic.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/bWGR.Rcheck/00LOCK-bWGR/00new/bWGR/libs
** generating debug symbols (dSYM)
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bWGR)