* installing *source* package ‘TDA’ ...
** package ‘TDA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
expr: syntax error
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
expr: syntax error
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -DBOOST_DISABLE_THREADS -DCGAL_EIGEN3_ENABLED -DCGAL_HEADER_ONLY -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -DBOOST_DISABLE_THREADS -DCGAL_EIGEN3_ENABLED -DCGAL_HEADER_ONLY -fPIC -falign-functions=64 -Wall -g -O2 -c diag.cpp -o diag.o
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:5:
In file included from ./topology/rips.h:6:
In file included from ./topology/simplex.h:221:
./topology/simplex.hpp:12:1: warning: 'BoundaryIterator' defined as a struct here but previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
struct Simplex<V,T>::BoundaryIterator: public boost::iterator_adaptor<BoundaryIterator, // Derived
^
./topology/simplex.h:47:9: note: did you mean struct here?
class BoundaryIterator;
^~~~~
struct
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:5:
./topology/rips.h:173:1: warning: 'ComparePair' defined as a struct here but previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
struct Rips<Distances_, Simplex_>::ComparePair
^
./topology/rips.h:35:9: note: did you mean struct here?
class ComparePair;
^~~~~
struct
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:8:
In file included from ./topology/dynamic-persistence.h:7:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages]
BOOST_PRAGMA_MESSAGE(
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
^
<scratch space>:95:2: note: expanded from here
message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " "<boost/bind/bind.hpp> + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.")
^
In file included from diag.cpp:13:
./tdautils/gridUtils.h:183:13: warning: unused variable 'value' [-Wunused-variable]
double value, value2; // max of value and value 2 is the fcn value.
^
./tdautils/gridUtils.h:183:20: warning: unused variable 'value2' [-Wunused-variable]
double value, value2; // max of value and value 2 is the fcn value.
^
In file included from diag.cpp:16:
./tdautils/typecastUtils.h:350:12: warning: unused variable 'iFill' [-Wunused-variable]
unsigned iFill = 0;
^
./tdautils/typecastUtils.h:394:12: warning: unused variable 'iFill' [-Wunused-variable]
unsigned iFill = 0;
^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:26:
In file included from ./CGAL/Delaunay_triangulation.h:15:
In file included from ./CGAL/license/Triangulation.h:17:
./CGAL/config.h:124:9: warning: 'BOOST_PARAMETER_MAX_ARITY' macro redefined [-Wmacro-redefined]
#define BOOST_PARAMETER_MAX_ARITY 12
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/parameter/config.hpp:61:9: note: previous definition is here
#define BOOST_PARAMETER_MAX_ARITY BOOST_MPL_LIMIT_VECTOR_SIZE
^
In file included from diag.cpp:34:
./kde.h:21:16: warning: unused variable 'pi' [-Wunused-variable]
const double pi = 3.141592653589793;
^
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:8:
In file included from ./topology/dynamic-persistence.h:332:
./topology/dynamic-persistence.hpp:60:73: warning: unused typedef 'TrailIterator' [-Wunused-local-typedef]
typedef typename Element::Trail::iterator TrailIterator;
^
In file included from diag.cpp:30:
./alphaComplex.h:45:9: warning: unused type alias 'Point' [-Wunused-local-typedef]
using Point = Kernel::Point_d;
^
11 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o TDA.so RcppExports.o diag.o -lgmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
expr: syntax error
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/TDA.Rcheck/00LOCK-TDA/00new/TDA/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TDA)