• using R version 4.4.0 alpha (2024-03-31 r86238)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘SPOT/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SPOT’ version ‘2.11.14’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘SPOT’ can be installed ... [8s/9s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/8s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) buildBO.Rd:22: Lost braces     22 | \item{\code{lambdaLower}}{ lower boundary for log10{lambda}, default is \code{-6}}        | ^ checkRd: (-1) buildBO.Rd:23: Lost braces     23 | \item{\code{lambdaUpper}}{ upper boundary for log10{lambda}, default is \code{0}}        | ^ checkRd: (-1) buildBO.Rd:41: Lost braces     41 | \item{\code{lambdaLower}}{ lower boundary for log10{lambda}, default is \code{-6}}        | ^ checkRd: (-1) buildBO.Rd:42: Lost braces     42 | \item{\code{lambdaUpper}}{ upper boundary for log10{lambda}, default is \code{0}}        | ^ checkRd: (-1) buildKriging.Rd:28: Lost braces     28 | \item{\code{lambdaLower}}{lower boundary for log10{lambda}, default is \code{-6}}        | ^ checkRd: (-1) buildKriging.Rd:29: Lost braces     29 | \item{\code{lambdaUpper}}{upper boundary for log10{lambda}, default is \code{0}}        | ^ checkRd: (-1) checkLowerSmallerThanUpper.Rd:15-19: Lost braces     15 | checkLowerNotEqualsUpper <- function(lower,upper){        | ^ checkRd: (-1) checkLowerSmallerThanUpper.Rd:16-18: Lost braces     16 | if(any(lower == upper)){        | ^ checkRd: (-1) optimDE.Rd:38: Lost braces     38 | code{DEoptim} package. It is basically a wrapper, to enable DEoptim for usage        | ^ checkRd: (-1) optimGenoud.Rd:38: Lost braces     38 | code{rgenoud} package. It is basically a wrapper, to enable genoud for usage        | ^ checkRd: (-1) optimLBFGSB.Rd:40: Lost braces     40 | which is part of the code{stats} package. It is basically a wrapper, to enable L-BFGS-B for usage        | ^
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'checkFunEvalsDesignSize.Rd':   ‘fun’ ‘upper’ Documented arguments not in \usage in Rd file 'print.spotBOModel.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotGaussianProcessModel.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotLOESS.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotLassoModel.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotLinearModel.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotRSM.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotRandomForest.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotRanger.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotSeverity.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'print.spotTreeModel.Rd':   ‘object’ Documented arguments not in \usage in Rd file 'simulationSpectral.Rd':   ‘...’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [16s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [22s/23s] OK   Running ‘testthat.R’ [22s/23s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [40s/41s] OK
• checking PDF version of manual ... [7s/8s] OK
• DONE Status: 2 NOTEs
• using check arguments '--no-clean-on-error '