* installing *source* package ‘SPECIES’ ...
** package ‘SPECIES’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c PPCG.f90 -o PPCG.o
PPCG.f90:437:38:
437 | theta_0=0.5*theta_0+0.5*thetaOld
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
PPCG.f90:534:62:
534 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
| ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
PPCG.f90:465:36:
465 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
| ^
note: ‘sum_b’ was declared here
PPCG.f90:177:9:
177 | IF (predict(k)<max_predict) THEN
| ^
Warning: ‘max_predict’ may be used uninitialized [-Wmaybe-uninitialized]
PPCG.f90:95:63:
95 | DOUBLE PRECISION test,Pmix,PmixScon,alpha(alphaK),max_predict, gamma2
| ^
note: ‘max_predict’ was declared here
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c WLunpmle.f90 -o WLunpmle.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c norrispollock.f90 -o norrispollock.o
norrispollock.f90:108:86:
108 | like=like+lgamma(SUM(n1(2:(t+1)))+n00+1)-lgamma(n00+1)-lgamma(SUM(n1(2:(t+1)))+1)
| ^
Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized]
norrispollock.f90:67:44:
67 | DOUBLE PRECISION like,tempprob,lgamma,n00, untrunPmix
| ^
note: ‘n00’ was declared here
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c pnpmle.f90 -o pnpmle.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c shared.f90 -o shared.o
shared.f90:535:0:
535 | DOUBLE PRECISION FUNCTION lgamma(X)
|
Warning: ‘lgamma’ declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
shared.f90:209:62:
209 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN
| ^
Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized]
shared.f90:148:36:
148 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2
| ^
note: ‘sum_b’ was declared here
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _enpmle_: registers 76 and 77 not saved contiguously in frame
ld: warning: could not create compact unwind for _emscon_theta_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _wbisectioncon_theta_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _pcgpen_: registers 76 and 77 not saved contiguously in frame
ld: warning: could not create compact unwind for _pcgpene_: register 79 saved somewhere other than in frame
ld: warning: could not create compact unwind for _pcgone_: register 77 saved somewhere other than in frame
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
ld: warning: could not create compact unwind for _untrunemnp_theta_: registers 72 and 73 not saved contiguously in frame
ld: warning: ld: warning: could not create compact unwind for _pennpmle_: register 79 saved somewhere other than in frame
could not create compact unwind for _checkgap_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _emnp_theta_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _wbisectionnp_theta_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _npmlepen_: registers 74 and 75 not saved contiguously in frame
ld: warning: could not create compact unwind for _lgamma_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _wlunpmle_: register 79 saved somewhere other than in frame
ld: warning: could not create compact unwind for _untrunwbisectionnp_theta_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _unpmle_one_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _unpmle_: registers 78 and 79 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/SPECIES.Rcheck/00LOCK-SPECIES/00new/SPECIES/libs
** generating debug symbols (dSYM)
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SPECIES)