Install log for 'PLNmodels'

* installing *source* package ‘PLNmodels’ ...
** package ‘PLNmodels’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c lambertW.cpp -o lambertW.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c nlopt_wrapper.cpp -o nlopt_wrapper.o
nlopt_wrapper.cpp:148:24: warning: lambda capture 'check' is not used [-Wunused-lambda-capture]
    auto f_and_grad = [check](const double * x, double * grad) -> double {
                       ^~~~~
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_diag_cov.cpp -o optim_diag_cov.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_fixed_cov.cpp -o optim_fixed_cov.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_full_cov.cpp -o optim_full_cov.o
optim_full_cov.cpp:68:60: warning: lambda capture 'w_bar' is not used [-Wunused-lambda-capture]
    auto objective_and_grad = [&metadata, &Y, &X, &O, &w, &w_bar](const double * params, double * grad) -> double {
                                                        ~~~^~~~~
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_genet_cov.cpp -o optim_genet_cov.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_rank_cov.cpp -o optim_rank_cov.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_spherical.cpp -o optim_spherical.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c optim_zi-pln.cpp -o optim_zi-pln.o
optim_zi-pln.cpp:103:49: warning: lambda capture 'R' is not used [-Wunused-lambda-capture]
    auto objective_and_grad = [&metadata, &X0, &R, &Xt_R](const double * params, double * grad) -> double {
                                             ~~~^
optim_zi-pln.cpp:208:26: warning: lambda capture 'X' is not used [-Wunused-lambda-capture]
        [&metadata, &Y, &X, &O_S2, &R, &X_B, &Omega](const double * params, double * grad) -> double {
                      ~~~^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/nloptr/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c packing.cpp -o packing.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o PLNmodels.so RcppExports.o lambertW.o nlopt_wrapper.o optim_diag_cov.o optim_fixed_cov.o optim_full_cov.o optim_genet_cov.o optim_rank_cov.o optim_spherical.o optim_zi-pln.o packing.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/PLNmodels.Rcheck/00LOCK-PLNmodels/00new/PLNmodels/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'sqrt' 
Note: wrong number of arguments to 'sqrt' 
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PLNmodels)