* installing *source* package ‘MR.RGM’ ... ** this is package ‘MR.RGM’ version ‘0.1.0’ ** package ‘MR.RGM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c NetworkMotif.cpp -o NetworkMotif.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_Diag.cpp -o RGM_SpikeSlab_Diag.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_Diag_Covariates.cpp -o RGM_SpikeSlab_Diag_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_Diag_Star.cpp -o RGM_SpikeSlab_Diag_Star.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_Diag_Star_Covariates.cpp -o RGM_SpikeSlab_Diag_Star_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_IW.cpp -o RGM_SpikeSlab_IW.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_IW_Covariates.cpp -o RGM_SpikeSlab_IW_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_IW_Star.cpp -o RGM_SpikeSlab_IW_Star.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_IW_Star_Covariates.cpp -o RGM_SpikeSlab_IW_Star_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_SSSL.cpp -o RGM_SpikeSlab_SSSL.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_SSSL_Covariates.cpp -o RGM_SpikeSlab_SSSL_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_SSSL_Star.cpp -o RGM_SpikeSlab_SSSL_Star.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_SpikeSlab_SSSL_Star_Covariates.cpp -o RGM_SpikeSlab_SSSL_Star_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_Diag.cpp -o RGM_Threshold_Diag.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_Diag_Covariates.cpp -o RGM_Threshold_Diag_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_Diag_Star.cpp -o RGM_Threshold_Diag_Star.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_Diag_Star_Covariates.cpp -o RGM_Threshold_Diag_Star_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_IW.cpp -o RGM_Threshold_IW.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_IW_Covariates.cpp -o RGM_Threshold_IW_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_IW_Star.cpp -o RGM_Threshold_IW_Star.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_IW_Star_Covariates.cpp -o RGM_Threshold_IW_Star_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_SSSL.cpp -o RGM_Threshold_SSSL.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_SSSL_Covariates.cpp -o RGM_Threshold_SSSL_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_SSSL_Star.cpp -o RGM_Threshold_SSSL_Star.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGM_Threshold_SSSL_Star_Covariates.cpp -o RGM_Threshold_SSSL_Star_Covariates.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppDist/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/GIGrvg/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o MR.RGM.so NetworkMotif.o RGM_SpikeSlab_Diag.o RGM_SpikeSlab_Diag_Covariates.o RGM_SpikeSlab_Diag_Star.o RGM_SpikeSlab_Diag_Star_Covariates.o RGM_SpikeSlab_IW.o RGM_SpikeSlab_IW_Covariates.o RGM_SpikeSlab_IW_Star.o RGM_SpikeSlab_IW_Star_Covariates.o RGM_SpikeSlab_SSSL.o RGM_SpikeSlab_SSSL_Covariates.o RGM_SpikeSlab_SSSL_Star.o RGM_SpikeSlab_SSSL_Star_Covariates.o RGM_Threshold_Diag.o RGM_Threshold_Diag_Covariates.o RGM_Threshold_Diag_Star.o RGM_Threshold_Diag_Star_Covariates.o RGM_Threshold_IW.o RGM_Threshold_IW_Covariates.o RGM_Threshold_IW_Star.o RGM_Threshold_IW_Star_Covariates.o RGM_Threshold_SSSL.o RGM_Threshold_SSSL_Covariates.o RGM_Threshold_SSSL_Star.o RGM_Threshold_SSSL_Star_Covariates.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R ld: warning: could not create compact unwind for ___emutls_get_address: does not use standard frame ld: warning: could not create compact unwind for _allocate_tramp_ctrl: does not use standard frame ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_created: does not use standard frame ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/MR.RGM.Rcheck/00LOCK-MR.RGM/00new/MR.RGM/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MR.RGM)